Co-expression analysis

Gene ID	Contig13290_at
Gene name
Homology with Arabidopsis	Similar to At4g14785: SCRL23 (SCR-Like 23) (HF=7e-1)
Module size	23 genes
NF	0.15
%ile	18.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	94.3	0.87	Contig13290_at	Contig13290	-	-	7e-1	At4g14785	SCRL23 (SCR-Like 23)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.90	HVSMEa0005F14r2_at	HVSMEa0005F14r2	-	-	3e-24	At4g02890	UBQ14	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.91	Contig4232_s_at	Contig4232	-	-	7e-2	At1g22890	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.91	Contig1636_at	Contig1636	-	-	5e-1	At5g06210	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.91	Contig8505_s_at	Contig8505	-	-	2e+0	At5g18280	ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.93	Contig9590_at	Contig9590	-	-	1e-3	At1g53165	ATMAP4K ALPHA1	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.92	Contig2859_x_at	Contig2859	-	-	3e-11	At1g08380	PSAO (photosystem I subunit O)	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.90	HV09H13u_at	HV09H13u	-	-	8e-1	At2g37970	SOUL-1	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.93	rbah11g06_s_at	rbah11g06	-	-	1e+0	At3g21860	ASK10 (ARABIDOPSIS SKP1-LIKE 10)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.93	Contig12037_at	Contig12037	-	-	2e-4	At5g22300	NIT4 (NITRILASE 4)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.92	Contig10256_at	Contig10256	-	-	5e-1	At1g80890	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.94	Contig12888_s_at	Contig12888	-	-	3e-2	At3g24200	FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.93	HS07H05u_s_at	HS07H05u	-	-	1e-6	At2g29080	ftsh3 (FtsH protease 3)	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.94	Contig13112_at	Contig13112	-	-	1e-8	At3g01370	ATCFM2 (CRM FAMILY MEMBER 2)	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.92	Contig12545_at	Contig12545	-	-	1e-3	At3g27160	GHS1 (GLUCOSE HYPERSENSITIVE 1)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.92	Contig13555_at	Contig13555	-	-	4e-1	Atmg01290	-	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.92	Contig3899_at	Contig3899	-	-	6e-10	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.91	Contig10254_s_at	Contig10254	-	-	1e-8	At5g02970	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.92	Contig11155_at	Contig11155	-	-	8e-1	At4g15140	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.92	Contig5064_at	Contig5064	-	-	1e-3	At2g20490	NOP10	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.93	Contig7118_at	Contig7118	-	-	3e+0	At3g50695	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.91	Contig6620_at	Contig6620	-	-	4e-1	At5g51180	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.91	Contig3441_at	Contig3441	-	-	7e-14	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.7	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.8	98.3	GSM281748	Genotype: Morex - rep1	GSE11182	Steptoe x Morex seedling leaf comparison
4.6	96.8	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.3	96.4	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6	95.3	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.4	94.8	GSM261059	Xantha b-12 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM281750	Genotype: Morex - rep3	GSE11182	Steptoe x Morex seedling leaf comparison

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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