Co-expression analysis

Gene ID	Contig1324_at
Gene name
Homology with Arabidopsis	Similar to At3g22930: calmodulin, putative (HF=4e-1)
Module size	6 genes
NF	0.88
%ile	98.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.97	Contig1324_at	Contig1324	-	-	4e-1	At3g22930	calmodulin, putative	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.95	Contig15467_at	Contig15467	-	-	5e+0	At3g15358	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.96	Contig6744_at	Contig6744	-	-	1e-8	At1g30970	SUF4 (suppressor of FRIGIDA4)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.96	Contig20759_at	Contig20759	-	-	3e+0	At1g27330	-	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.97	HVSMEb0014B13r2_at	HVSMEb0014B13r2	-	-	5e+0	At2g35208	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.97	Contig12086_at	Contig12086	-	-	1e+0	At1g49640	hydrolase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.0	99.6	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
12.7	99.4	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.6	98.6	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
6.4	98.1	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.6	95.3	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4	94.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM373005	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1	94.1	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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