Co-expression analysis

Gene ID Contig1323_s_at
Gene name
Homology with ArabidopsisSimilar to At3g56800: CAM3 (CALMODULIN 3) (HF=1e-72)
Module size 22 genes
NF 0.31
%ile 40.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8494.30.93Contig1323_s_atContig1323--1e-72At3g56800CAM3 (CALMODULIN 3)O.I.H.G.S.X.
0.4661.00.95Contig4290_atContig4290--4e-15At4g32390phosphate translocator-relatedO.I.H.G.S.X.
0.4458.90.95Contig4806_atContig4806--4e-1At4g08685SAH7O.I.H.G.S.X.
0.4053.10.95EBem04_SQ003_G17_s_atEBem04_SQ003_G17--3e+0At3g48070protein binding / zinc ion bindingO.I.H.G.S.X.
0.3950.50.95Contig10415_atContig10415--2e+0At5g44570unknown proteinO.I.H.G.S.X.
0.3443.60.96Contig2811_atContig2811--3e-1At1g21550calcium-binding protein, putativeO.I.H.G.S.X.
0.3443.60.96Contig9136_atContig9136--1e-5At3g51140-O.I.H.G.S.X.
0.3443.60.95Contig6995_atContig6995--2e-8At5g57270unknown proteinO.I.H.G.S.X.
0.3240.30.95Contig8177_atContig8177--7e-3At2g18400ribosomal protein L6 family proteinO.I.H.G.S.X.
0.3037.00.95Contig13060_atContig13060--5e-10At4g10060catalytic/ glucosylceramidaseO.I.H.G.S.X.
0.3037.00.95Contig7557_s_atContig7557--6e-18At5g17530phosphoglucosamine mutase family proteinO.I.H.G.S.X.
0.2935.50.96Contig8312_atContig8312--1e-1At3g23610dual specificity protein phosphatase (DsPTP1)O.I.H.G.S.X.
0.2835.50.95Contig5116_atContig5116--6e-15At2g18740small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putativeO.I.H.G.S.X.
0.2732.10.96Contig14472_atContig14472--4e-8At1g28440HSL1 (HAESA-Like 1)O.I.H.G.S.X.
0.2630.40.95Contig8323_atContig8323--3e+0Atmg00890-O.I.H.G.S.X.
0.2630.40.96Contig15156_atContig15156--2e+0At1g48210serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.2224.20.96Contig5664_atContig5664--1e-2At1g25450KCS5 (3-KETOACYL-COA SYNTHASE 5)O.I.H.G.S.X.
0.1919.60.95Contig15157_atContig15157--1e+0At3g20370meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.1818.20.96Contig6264_atContig6264--2e-5At3g11330leucine-rich repeat family proteinO.I.H.G.S.X.
0.1818.20.96Contig11464_atContig11464--6e-20At1g55740AtSIP1 (Arabidopsis thaliana seed imbibition 1)O.I.H.G.S.X.
0.1716.90.96Contig6787_atContig6787--7e-1At2g36190AtcwINV4 (Arabidopsis thaliana cell wall invertase 4)O.I.H.G.S.X.
0.1716.90.95HC111D12_T3_s_atHC111D12_T3--8e-1At5g63700zinc finger (C3HC4 type RING finger) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.194.1GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.692.3GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.692.3GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.591.9GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.491.4GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.390.9GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.290.3GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.290.3GSM440966Stressed palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.290.3GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage