Co-expression analysis

Gene ID Contig13239_at
Gene name
Homology with ArabidopsisSimilar to At1g58460: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.07
%ile 8.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.92Contig13239_atContig13239--2e+0At1g58460unknown proteinO.I.H.G.S.X.
0.1919.60.92Contig14890_atContig14890--5e-2At2g18320-O.I.H.G.S.X.
0.1818.20.92HVSMEb0006K18r2_atHVSMEb0006K18r2--7e-2At5g13220JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)O.I.H.G.S.X.
0.043.40.93Contig12897_atContig12897--1e-3At4g28600NPGR2 (no pollen germination related 2)O.I.H.G.S.X.
0.043.40.92EBem06_SQ003_J07_atEBem06_SQ003_J07--3e+0At2g42530COR15B (COLD REGULATED 15B)O.I.H.G.S.X.
0.043.40.92Contig22044_atContig22044--2e-39At2g36170ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.999.3GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.699.0GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.298.5GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.098.4GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM440968Stressed palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.296.3GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.096.0GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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