Co-expression analysis

Gene ID	Contig13239_at
Gene name
Homology with Arabidopsis	Similar to At1g58460: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.07
%ile	8.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.92	Contig13239_at	Contig13239	-	-	2e+0	At1g58460	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.92	Contig14890_at	Contig14890	-	-	5e-2	At2g18320	-	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.92	HVSMEb0006K18r2_at	HVSMEb0006K18r2	-	-	7e-2	At5g13220	JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.93	Contig12897_at	Contig12897	-	-	1e-3	At4g28600	NPGR2 (no pollen germination related 2)	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.92	EBem06_SQ003_J07_at	EBem06_SQ003_J07	-	-	3e+0	At2g42530	COR15B (COLD REGULATED 15B)	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.92	Contig22044_at	Contig22044	-	-	2e-39	At2g36170	ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.9	99.3	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.6	99.0	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.0	98.4	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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