Co-expression analysis

Gene ID	Contig13233_at
Gene name
Homology with Arabidopsis	Similar to At2g42260: UVI4 (UV-B-INSENSITIVE 4) (HF=5e-1)
Module size	6 genes
NF	0.38
%ile	52.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.93	Contig13233_at	Contig13233	-	-	5e-1	At2g42260	UVI4 (UV-B-INSENSITIVE 4)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.92	Contig9794_at	Contig9794	-	-	4e-1	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig9793_at	Contig9793	-	-	8e-26	At1g61140	EDA16 (embryo sac development arrest 16)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.90	Contig7031_at	Contig7031	-	-	7e-1	At1g58100	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.89	Contig19644_at	Contig19644	-	-	1e+0	At1g79790	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.90	HVSMEf0009N22f_at	HVSMEf0009N22f	-	-	3e-2	At4g29170	ATMND1	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.3	99.4	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.2	98.5	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
6.5	98.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.4	96.6	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.7	95.5	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.7	95.5	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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