Co-expression analysis

Gene ID Contig13202_at
Gene name
Homology with ArabidopsisSimilar to At3g02150: PTF1 (PLASTID TRANSCRIPTION FACTOR 1) (HF=2e+0)
Module size 6 genes
NF 0.56
%ile 77.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.89Contig13202_atContig13202--2e+0At3g02150PTF1 (PLASTID TRANSCRIPTION FACTOR 1)O.I.H.G.S.X.
0.7388.70.89Contig807_s_atContig807--6e-53At1g55490CPN60B (CHAPERONIN 60 BETA)O.I.H.G.S.X.
0.6784.70.86HVSMEh0089A15r2_atHVSMEh0089A15r2--1e+0At3g14670unknown proteinO.I.H.G.S.X.
0.6077.30.89Contig10699_atContig10699Mg-protoporphyrin IX-2e-23At1g08520CHLDO.I.H.G.S.X.
0.3342.60.91Contig26369_atContig26369--4e+0At4g02620vacuolar ATPase subunit F family proteinO.I.H.G.S.X.
0.2224.20.91Contig11177_atContig11177--5e-1At5g53730harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.199.5GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
8.698.8GSM398262HS41-1_0d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
6.598.2GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.598.2GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
6.198.0GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.397.4GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
5.197.3GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
4.596.7GSM431573pathogen isolates: Polymyxa betae - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.296.3GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.943.1.S1_at, orthologous to the query gene, Contig13202_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7892.5ZmAffx.943.1.S1_atAt3g02150--2e+0At5g62290nucleotide-sensitive chloride conductance regulator (ICln) family proteinO.I.H.G.S.X.
0.9399.3ZmAffx.838.1.S1_atAt3g02150--3e+0At1g61700DNA-directed RNA polymerase II, putative (RPB10)O.I.H.G.S.X.
0.9199.0ZmAffx.496.1.S1_atAt3g02150--8e-1At5g48580FKBP15-2O.I.H.G.S.X.
0.9097.0ZmAffx.586.1.A1_atAt3g02150--3e+0At4g24180-O.I.H.G.S.X.
0.8996.8Zm.6048.2.S1_atAt3g02150--6e-17At2g24360serine/threonine/tyrosine kinase, putativeO.I.H.G.S.X.
0.8896.7Zm.6048.1.S1_atAt3g02150serine/threonine protein kinase-7e-17At2g24360serine/threonine/tyrosine kinase, putativeO.I.H.G.S.X.
0.8495.8Zm.15991.1.S1_atAt3g02150hypothetical protein LOC100273177-2e+0At5g52975unknown proteinO.I.H.G.S.X.
0.8395.6Zm.17992.1.A1_atAt3g02150--2e-5At5g36210serine-type peptidaseO.I.H.G.S.X.
0.8294.6ZmAffx.723.1.A1_atAt3g02150--8e-1At3g07150unknown proteinO.I.H.G.S.X.
0.8094.0ZmAffx.1143.1.A1_atAt3g02150--8e+0At5g01340mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.7691.1ZmAffx.1331.1.S1_s_atAt3g02150--2e+0Atcg01300-O.I.H.G.S.X.
0.7590.8------O.I.H.G.S.X.
0.7590.8Zm.17995.1.A1_atAt3g02150hypothetical protein LOC100276949-2e-13At1g53450unknown proteinO.I.H.G.S.X.
0.7188.2Zm.16594.2.S1_atAt3g02150--4e-7At5g65620peptidase M3 family protein / thimet oligopeptidase family proteinO.I.H.G.S.X.
0.6986.5ZmAffx.602.1.S1_atAt3g02150--8e-1At1g30670basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.6986.5Zm.6048.2.A1_atAt3g02150--6e-17At2g24360serine/threonine/tyrosine kinase, putativeO.I.H.G.S.X.
0.6682.3ZmAffx.1354.1.S1_atAt3g02150--3e+0At4g07940unknown proteinO.I.H.G.S.X.
0.6381.1Zm.15233.1.A1_atAt3g02150--4e+0At3g11050ATFER2 (ferritin 2)O.I.H.G.S.X.
0.5976.1ZmAffx.800.1.S1_atAt3g02150hypothetical protein LOC100279626-2e-4At3g58580hydrolaseO.I.H.G.S.X.
0.5674.4Zm.6991.1.A1_atAt3g02150ribosomal protein L35 containing protein-7e+0At5g45590unknown proteinO.I.H.G.S.X.
0.5571.6ZmAffx.54.1.A1_atAt3g02150--5e-2At3g20610non-race specific disease resistance protein, putativeO.I.H.G.S.X.
0.5469.8ZmAffx.1333.1.S1_s_atAt3g02150--5e-50Atcg01120-O.I.H.G.S.X.
0.4048.5ZmAffx.82.1.S1_atAt3g02150--5e-2At4g11910-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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