Co-expression analysis

Gene ID	Contig13202_at
Gene name
Homology with Arabidopsis	Similar to At3g02150: PTF1 (PLASTID TRANSCRIPTION FACTOR 1) (HF=2e+0)
Module size	6 genes
NF	0.56
%ile	77.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.89	Contig13202_at	Contig13202	-	-	2e+0	At3g02150	PTF1 (PLASTID TRANSCRIPTION FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.89	Contig807_s_at	Contig807	-	-	6e-53	At1g55490	CPN60B (CHAPERONIN 60 BETA)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.86	HVSMEh0089A15r2_at	HVSMEh0089A15r2	-	-	1e+0	At3g14670	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.89	Contig10699_at	Contig10699	Mg-protoporphyrin IX	-	2e-23	At1g08520	CHLD	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.91	Contig26369_at	Contig26369	-	-	4e+0	At4g02620	vacuolar ATPase subunit F family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.91	Contig11177_at	Contig11177	-	-	5e-1	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.1	99.5	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
8.6	98.8	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.5	98.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
6.1	98.0	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.3	97.4	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
5.1	97.3	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
4.5	96.7	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.2	96.3	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

A co-expression module including the grape gene, 1614328_at, orthologous to the query gene, Contig13202_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	95.1	1614328_at	At3g02150	-	-	1e+0	At2g03640	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	1621037_at	At3g02150	-	-	5e+0	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	O.I.	H.G.	S.X.	Please select
0.19	20.9	1617537_at	At3g02150	hypothetical protein LOC100267729	-	7e-2	At1g53460	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	14.4	1607488_at	At3g02150	hypothetical protein LOC100245682	-	1e+0	At3g06985	LCR44 (Low-molecular-weight cysteine-rich 44)	O.I.	H.G.	S.X.	Please select
0.11	11.3	1612957_at	At3g02150	hypothetical protein LOC100248904	-	3e-10	At1g22310	MBD8	O.I.	H.G.	S.X.	Please select
0.04	5.2	1616726_at	At3g02150	hypothetical protein LOC100255605	-	8e-11	At2g15290	TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21)	O.I.	H.G.	S.X.	Please select
0.02	3.2	1620220_at	At3g02150	hypothetical protein LOC100243115	-	7e-46	At5g54760	eukaryotic translation initiation factor SUI1, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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