Co-expression analysis

Gene ID Contig13202_at
Gene name
Homology with ArabidopsisSimilar to At3g02150: PTF1 (PLASTID TRANSCRIPTION FACTOR 1) (HF=2e+0)
Module size 6 genes
NF 0.56
%ile 77.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.89Contig13202_atContig13202--2e+0At3g02150PTF1 (PLASTID TRANSCRIPTION FACTOR 1)O.I.H.G.S.X.
0.7388.70.89Contig807_s_atContig807--6e-53At1g55490CPN60B (CHAPERONIN 60 BETA)O.I.H.G.S.X.
0.6784.70.86HVSMEh0089A15r2_atHVSMEh0089A15r2--1e+0At3g14670unknown proteinO.I.H.G.S.X.
0.6077.30.89Contig10699_atContig10699Mg-protoporphyrin IX-2e-23At1g08520CHLDO.I.H.G.S.X.
0.3342.60.91Contig26369_atContig26369--4e+0At4g02620vacuolar ATPase subunit F family proteinO.I.H.G.S.X.
0.2224.20.91Contig11177_atContig11177--5e-1At5g53730harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.199.5GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
8.698.8GSM398262HS41-1_0d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
6.598.2GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.598.2GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
6.198.0GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.397.4GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
5.197.3GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
4.596.7GSM431573pathogen isolates: Polymyxa betae - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.296.3GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.215857.1.S1_x_at, orthologous to the query gene, Contig13202_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5380.5PtpAffx.215857.1.S1_x_atAt3g02150--4e+0At3g18940clast3-relatedO.I.H.G.S.X.
0.8897.7PtpAffx.223743.1.S1_atAt3g02150--2e+0At3g03730F-box family proteinO.I.H.G.S.X.
0.8897.7PtpAffx.215044.1.S1_s_atAt3g02150hypothetical protein-0Atcg01280-O.I.H.G.S.X.
0.8697.4PtpAffx.218435.1.S1_x_atAt3g02150hypothetical protein-0Atcg01250-O.I.H.G.S.X.
0.8697.4PtpAffx.223741.1.S1_x_atAt3g02150hypothetical protein-3e-100Atcg01250-O.I.H.G.S.X.
0.8697.4PtpAffx.215608.1.S1_s_atAt3g02150--4e+0At5g40950RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27)O.I.H.G.S.X.
0.8697.4PtpAffx.220744.1.S1_s_atAt3g02150hypothetical protein-0Atcg01280-O.I.H.G.S.X.
0.8597.2PtpAffx.216274.1.S1_s_atAt3g02150hypothetical protein-0Atcg01280-O.I.H.G.S.X.
0.8497.1PtpAffx.216669.1.S1_x_atAt3g02150--3e-1At4g31960unknown proteinO.I.H.G.S.X.
0.8397.0PtpAffx.220746.1.S1_x_atAt3g02150hypothetical protein-7e-89Atcg01250-O.I.H.G.S.X.
0.8196.1PtpAffx.214900.1.S1_atAt3g02150hypothetical protein-0Atcg01280-O.I.H.G.S.X.
0.8096.0PtpAffx.215007.1.S1_s_atAt3g02150hypothetical protein-0Atcg01280-O.I.H.G.S.X.
0.7895.1PtpAffx.217524.1.S1_s_atAt3g02150hypothetical protein-0Atcg01280-O.I.H.G.S.X.
0.7794.9PtpAffx.223733.1.S1_x_atAt3g02150hypothetical protein-0Atcg01250-O.I.H.G.S.X.
0.7794.9PtpAffx.81640.1.A1_atAt3g02150--0Atcg01280-O.I.H.G.S.X.
0.7493.8PtpAffx.223730.1.S1_s_atAt3g02150--3e+0At5g44495-O.I.H.G.S.X.
0.7292.7PtpAffx.217627.1.S1_s_atAt3g02150hypothetical protein-4e-152Atcg01280-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage