Co-expression analysis

Gene ID Contig13168_at
Gene name
Homology with ArabidopsisSimilar to At5g50130: short-chain dehydrogenase/reductase (SDR) family protein (HF=3e+0)
Module size 6 genes
NF 0.54
%ile 75.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.97Contig13168_atContig13168--3e+0At5g50130short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.5066.90.96Contig6491_atContig6491--6e-1At5g02230haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.4458.90.96Contig13436_atContig13436--3e-1At3g23200unknown proteinO.I.H.G.S.X.
0.4458.90.97Contig25401_atContig25401--4e-3At1g78710unknown proteinO.I.H.G.S.X.
0.3647.10.97Contig23171_atContig23171--2e+0At1g11570nuclear transport factor 2 (NTF2), putativeO.I.H.G.S.X.
0.3138.60.96Contig11789_atContig11789--2e+0At3g04620nucleic acid bindingO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7388.70.96Contig2110_atContig2110--1e-2At2g39900LIM domain-containing proteinO.I.H.G.S.X.
0.6077.30.96Contig25651_atContig25651--5e-1At2g41225unknown proteinO.I.H.G.S.X.
0.5774.90.95Contig10724_atContig10724--1e-10At3g48890ATMP2O.I.H.G.S.X.
0.5572.00.96Contig13959_atContig13959--1e+0At3g18680aspartate/glutamate/uridylate kinase family proteinO.I.H.G.S.X.
0.5369.70.95Contig13156_atContig13156--3e-6At1g77122unknown proteinO.I.H.G.S.X.
0.5066.90.95Contig14279_atContig14279--6e+0At1g77290tetrachloro-p-hydroquinone reductive dehalogenase-relatedO.I.H.G.S.X.
0.5066.90.96Contig9797_atContig9797--1e-2At1g23010LPR1 (Low Phosphate Root1)O.I.H.G.S.X.
0.4661.00.96Contig8925_atContig8925--3e+0At5g66060iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsO.I.H.G.S.X.
0.4458.90.96Contig17354_atContig17354--4e+0At2g39020GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.4458.90.97Contig18328_atContig18328--5e-1Atmg00110-O.I.H.G.S.X.
0.4356.40.96Contig18587_atContig18587--3e-2At5g10320unknown proteinO.I.H.G.S.X.
0.4356.40.96Contig13036_atContig13036--6e-1At3g57000nucleolar essential protein-relatedO.I.H.G.S.X.
0.4053.10.94Contig10955_atContig10955--5e-32At3g17750protein kinase family proteinO.I.H.G.S.X.
0.4053.10.94Contig16070_atContig16070--9e+0At5g43410ethylene-responsive factor, putativeO.I.H.G.S.X.
0.3849.50.95Contig9351_s_atContig9351--1e+0At5g42070unknown proteinO.I.H.G.S.X.
0.3849.50.96Contig4878_atContig4878--8e-19At1g47260GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)O.I.H.G.S.X.
0.3647.10.95EBem10_SQ002_A13_atEBem10_SQ002_A13--8e+0At3g25580thioredoxin-relatedO.I.H.G.S.X.
0.3647.10.95HV_CEb0017F03r2_s_atHV_CEb0017F03r2light-harvesting complex I-2e-11At3g54890LHCA1O.I.H.G.S.X.
0.3647.10.95Contig24322_atContig24322--5e+0At2g04425LCR82 (Low-molecular-weight cysteine-rich 82)O.I.H.G.S.X.
0.3545.10.96Contig8059_atContig8059--8e-18At1g08720EDR1 (ENHANCED DISEASE RESISTANCE 1)O.I.H.G.S.X.
0.3545.10.96Contig24772_atContig24772--1e-4At5g63740zinc finger protein-relatedO.I.H.G.S.X.
0.3342.60.93Contig23998_atContig23998--4e+0At3g21150zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.3342.60.94Contig136_s_atContig136--2e-98At4g40040histone H3.2O.I.H.G.S.X.
0.3342.60.94Contig8132_atContig8132--4e-8At5g59780MYB59 (MYB DOMAIN PROTEIN 59)O.I.H.G.S.X.
0.3342.60.95Contig21861_atContig21861--9e-2At1g23530unknown proteinO.I.H.G.S.X.
0.3342.60.96Contig11383_atContig11383--2e+0At4g36560unknown proteinO.I.H.G.S.X.
0.3240.30.93rbaal40g12_atrbaal40g12--1e+0At5g18850unknown proteinO.I.H.G.S.X.
0.3240.30.93Contig7290_atContig7290--5e-2At5g42440protein kinase family proteinO.I.H.G.S.X.
0.3240.30.95Contig15150_atContig15150--2e+0At4g13850GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)O.I.H.G.S.X.
0.3240.30.95Contig12109_atContig12109--2e-16At3g05760nucleic acid binding / zinc ion bindingO.I.H.G.S.X.
0.3138.60.93Contig18310_atContig18310--1e+0At5g07600oleosin / glycine-rich proteinO.I.H.G.S.X.
0.3138.60.93Contig9989_atContig9989--2e-1At4g23710VAG2O.I.H.G.S.X.
0.3138.60.95Contig3970_atContig3970--2e-3At3g55460SCL30O.I.H.G.S.X.
0.3138.60.96Contig12656_s_atContig12656--8e+0At5g45830DOG1 (DELAY OF GERMINATION 1)O.I.H.G.S.X.
0.2935.50.95Contig6902_atContig6902--3e-1At4g13720inosine triphosphate pyrophosphatase, putative / HAM1 family proteinO.I.H.G.S.X.
0.2935.50.96Contig20549_atContig20549--2e-27At2g39480PGP6 (P-GLYCOPROTEIN 6)O.I.H.G.S.X.
0.2935.50.96Contig3848_atContig3848--7e-23At4g34350HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)O.I.H.G.S.X.
0.2732.10.92Contig2916_atContig2916UDP-D-glucuronate decarboxylase-1e-33At2g47650UXS4 (UDP-XYLOSE SYNTHASE 4)O.I.H.G.S.X.
0.2732.10.95Contig12484_atContig12484--8e-5At5g02580unknown proteinO.I.H.G.S.X.
0.2732.10.93Contig1169_atContig1169--3e-20At5g22880HTB2O.I.H.G.S.X.
0.2732.10.95Contig22359_atContig22359--7e-2At5g04260WCRKC2 (WCRKC THIOREDOXIN 2)O.I.H.G.S.X.
0.2732.10.95Contig4654_atContig4654--2e-2At3g57930unknown proteinO.I.H.G.S.X.
0.2528.90.92Contig14958_atContig14958--7e-1At1g48960universal stress protein (USP) family proteinO.I.H.G.S.X.
0.2528.90.94Contig6948_atContig6948--2e+0At2g25230MYB100 (myb domain protein 100)O.I.H.G.S.X.
0.2528.90.94Contig2465_atContig2465--1e-135At1g20260hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanismO.I.H.G.S.X.
0.2528.90.94Contig22076_atContig22076--1e+1At5g64810WRKY51O.I.H.G.S.X.
0.2528.90.95Contig22799_atContig22799--1e+0At4g32551LUG (LEUNIG)O.I.H.G.S.X.
0.2528.90.95Contig11437_s_atContig11437--7e-2At3g06780glycine-rich proteinO.I.H.G.S.X.
0.2528.90.95Contig11378_atContig11378--2e+0At4g22530embryo-abundant protein-relatedO.I.H.G.S.X.
0.2528.90.95Contig9517_atContig9517--2e-45At5g40200DegP9 (DegP protease 9)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.897.8GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.897.8GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
3.595.1GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM261036Dicktoo-subzero-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
3.394.6GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
3.093.8GSM261024ABA-Early-rep1GSE10328ABA experimentLink to GEO
2.993.4GSM16082619% SWC rep3GSE6990Barley drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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