Co-expression analysis

Gene ID	Contig13168_at
Gene name
Homology with Arabidopsis	Similar to At5g50130: short-chain dehydrogenase/reductase (SDR) family protein (HF=3e+0)
Module size	6 genes
NF	0.54
%ile	75.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	Contig13168_at	Contig13168	-	-	3e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig6491_at	Contig6491	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig13436_at	Contig13436	-	-	3e-1	At3g23200	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig25401_at	Contig25401	-	-	4e-3	At1g78710	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.97	Contig23171_at	Contig23171	-	-	2e+0	At1g11570	nuclear transport factor 2 (NTF2), putative	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig11789_at	Contig11789	-	-	2e+0	At3g04620	nucleic acid binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.8	97.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
3.5	95.1	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
3.3	94.6	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
3.0	93.8	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
2.9	93.4	GSM160826	19% SWC rep3	GSE6990	Barley drought stress

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.88.1.A1_at, orthologous to the query gene, Contig13168_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	81.7	ZmAffx.88.1.A1_at	At5g50130	carnitine racemase/ catalytic	-	3e+0	At5g35375	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	94.0	Zm.6467.1.A1_at	At5g50130	-	-	2e+0	At5g59470	PQ-loop repeat family protein / transmembrane family protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	Zm.3468.1.A1_at	At5g50130	FYVE zinc finger family protein	-	1e-2	At2g26210	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.76	91.1	Zm.268.1.A1_at	At5g50130	eukaryotic initiation factor 4A	-	1e-110	At3g13920	EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)	O.I.	H.G.	S.X.	Please select
0.76	91.1	Zm.14071.1.A1_at	At5g50130	hypothetical protein LOC100279213	-	2e-16	At5g19330	armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein	O.I.	H.G.	S.X.	Please select
0.76	91.1	Zm.6367.1.S1_at	At5g50130	-	-	3e-1	At4g26200	ACS7	O.I.	H.G.	S.X.	Please select
0.74	90.3	Zm.4746.1.A1_at	At5g50130	-	-	3e-3	At1g58030	CAT2 (CATIONIC AMINO ACID TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select
0.71	88.2	Zm.4882.2.S1_at	At5g50130	-	-	9e+0	At3g62920	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	86.5	Zm.6139.2.A1_at	At5g50130	methionyl-tRNA synthetase	-	1e-5	At2g40660	tRNA-binding region domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.1682.2.S1_at	At5g50130	ran-binding protein 1	-	3e-12	At1g07140	SIRANBP	O.I.	H.G.	S.X.	Please select
0.65	82.1	Zm.4882.1.S1_at	At5g50130	hypothetical protein LOC100193470 /// hypothetical protein LOC100273280 /// yabby15	-	2e-11	At4g00180	YAB3 (YABBY3)	O.I.	H.G.	S.X.	Please select
0.65	82.1	Zm.16508.2.A1_at	At5g50130	60S ribosomal protein L39 /// ribosomal protein L39	-	1e-15	At4g31985	60S ribosomal protein L39 (RPL39C)	O.I.	H.G.	S.X.	Please select
0.63	81.1	Zm.10346.3.A1_x_at	At5g50130	-	-	2e+0	At4g23271	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	Zm.2176.1.S1_at	At5g50130	-	-	4e+0	At1g54215	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	Zm.8306.1.A1_at	At5g50130	-	-	3e-4	At5g01960	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	Zm.7411.1.A1_at	At5g50130	hypothetical protein LOC100277462	-	2e+0	At2g14390	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	75.1	Zm.17163.1.A1_at	At5g50130	-	-	1e+0	At2g24870	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.58	75.1	Zm.14806.1.A1_at	At5g50130	hypothetical protein LOC100217201	-	1e-31	At1g66340	ETR1 (ETHYLENE RESPONSE 1)	O.I.	H.G.	S.X.	Please select
0.52	67.3	Zm.16941.1.S1_at	At5g50130	-	-	2e+1	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.47	59.9	ZmAffx.1086.1.A1_at	At5g50130	-	-	3e+0	At2g01755	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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