Co-expression analysis

Gene ID	Contig13168_at
Gene name
Homology with Arabidopsis	Similar to At5g50130: short-chain dehydrogenase/reductase (SDR) family protein (HF=3e+0)
Module size	6 genes
NF	0.54
%ile	75.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	Contig13168_at	Contig13168	-	-	3e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig6491_at	Contig6491	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig13436_at	Contig13436	-	-	3e-1	At3g23200	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig25401_at	Contig25401	-	-	4e-3	At1g78710	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.97	Contig23171_at	Contig23171	-	-	2e+0	At1g11570	nuclear transport factor 2 (NTF2), putative	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig11789_at	Contig11789	-	-	2e+0	At3g04620	nucleic acid binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.8	97.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
3.5	95.1	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
3.3	94.6	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
3.0	93.8	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
2.9	93.4	GSM160826	19% SWC rep3	GSE6990	Barley drought stress

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.21552.1.S1_at, orthologous to the query gene, Contig13168_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	94.2	TaAffx.21552.1.S1_at	At5g50130	-	-	1e-2	At2g24790	COL3 (CONSTANS-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.45	65.2	Ta.6467.1.S1_x_at	At5g50130	-	-	1e-35	At4g12590	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.10105.1.S1_at	At5g50130	-	-	7e-2	At2g44710	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.6039.1.S1_at	At5g50130	-	-	1e-8	At1g77180	chromatin protein family	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.12719.1.S1_at	At5g50130	-	-	5e-1	At4g19180	nucleoside phosphatase family protein / GDA1/CD39 family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.6061.1.A1_at	At5g50130	-	-	8e-1	At3g29300	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.28580.1.S1_at	At5g50130	-	-	4e-9	At2g46260	BTB/POZ domain-containing protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.12680.1.S1_at	At5g50130	-	-	3e-21	At3g05760	nucleic acid binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.14174.1.S1_at	At5g50130	-	-	3e-3	At1g49590	formin-binding protein-related	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.9301.1.S1_at	At5g50130	-	-	4e-25	At1g14670	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.3448.1.S1_at	At5g50130	-	-	6e-1	At3g04560	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.7544.1.S1_at	At5g50130	-	-	9e-14	At1g51720	glutamate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.14349.1.S1_x_at	At5g50130	-	-	9e-26	At1g45000	26S proteasome regulatory complex subunit p42D, putative	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.9581.1.S1_x_at	At5g50130	-	-	2e+0	At4g40011	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.12107.1.A1_at	At5g50130	-	-	1e+0	At4g04580	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.21357.1.S1_at	At5g50130	-	-	2e-24	At1g17720	ATB BETA	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.10227.1.S1_at	At5g50130	-	-	1e+0	At3g02560	40S ribosomal protein S7 (RPS7B)	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.6692.1.S1_at	At5g50130	-	-	9e-10	At4g36960	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.7050.2.S1_a_at	At5g50130	-	-	7e-5	At3g22290	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.25019.1.S1_at	At5g50130	-	-	9e-5	At2g23350	PAB4 (POLY(A) BINDING PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.9802.1.A1_at	At5g50130	-	-	1e+0	At1g23050	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	TaAffx.128777.1.S1_at	At5g50130	-	-	6e-5	At1g43690	ubiquitin interaction motif-containing protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.7457.1.S1_at	At5g50130	-	-	3e+0	Atmg01260	-	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.4129.1.S1_at	At5g50130	-	-	9e+0	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.12554.1.S1_a_at	At5g50130	-	-	1e+0	At2g09970	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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