CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig13168_at

Gene name
Homology with Arabidopsis Similar to At5g50130: short-chain dehydrogenase/reductase (SDR) family protein (HF=3e+0)

Module size 6 genes

NF 0.54

%ile 75.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.97 Contig13168_at Contig13168 - - 3e+0 At5g50130 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.50 66.9 0.96 Contig6491_at Contig6491 - - 6e-1 At5g02230 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.44 58.9 0.96 Contig13436_at Contig13436 - - 3e-1 At3g23200 unknown protein O.I. H.G. S.X.
0.44 58.9 0.97 Contig25401_at Contig25401 - - 4e-3 At1g78710 unknown protein O.I. H.G. S.X.
0.36 47.1 0.97 Contig23171_at Contig23171 - - 2e+0 At1g11570 nuclear transport factor 2 (NTF2), putative O.I. H.G. S.X.
0.31 38.6 0.96 Contig11789_at Contig11789 - - 2e+0 At3g04620 nucleic acid binding O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.8 97.8 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.8 97.8 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.0 96.0 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.6 95.3 GSM160823 19% SWC rep1 GSE6990 Barley drought stress
3.5 95.1 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.4 94.8 GSM261036 Dicktoo-subzero-rep1 GSE10329 Low temperature stress in cv. Dicktoo
3.3 94.6 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.1 94.1 GSM160819 38% SWC rep1 GSE6990 Barley drought stress
3.0 93.8 GSM261024 ABA-Early-rep1 GSE10328 ABA experiment
2.9 93.4 GSM160826 19% SWC rep3 GSE6990 Barley drought stress

Inter-species module comparison

A co-expression module including the rice gene, Os04g0652500, orthologous to the query gene, Contig13168_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 79.7 Os04g0652500 At5g50130 - Conserved hypothetical protein 3e+0 At3g21175 ZML1 (ZIM-LIKE 1) O.I. H.G. S.X.
0.69 87.9 Os08g0499800 At5g50130 - TPR-like domain containing protein 9e-1 At3g04530 PPCK2 O.I. H.G. S.X.
0.64 83.4 Os09g0529400 At5g50130 - Conserved hypothetical protein 2e-1 At5g33898 unknown protein O.I. H.G. S.X.
0.64 83.4 Os01g0324200 At5g50130 - SWIM Zn-finger domain containing protein 2e+0 At1g71200 DNA binding / transcription factor O.I. H.G. S.X.
0.61 81.2 Os11g0119200 At5g50130 - Cytochrome P450 family protein 8e-8 At5g08139 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.55 73.7 Os01g0531200 At5g50130 - - 3e-1 At1g72080 unknown protein O.I. H.G. S.X.
0.52 69.6 Os11g0101200 At5g50130 - CCT domain containing protein 3e-1 At3g11100 transcription factor O.I. H.G. S.X.
0.50 68.0 Os05g0422600 At5g50130 - Conserved hypothetical protein 7e+0 At5g48020 unknown protein O.I. H.G. S.X.
0.50 68.0 Os12g0127500 At5g50130 - - 3e-3 At5g43410 ethylene-responsive factor, putative O.I. H.G. S.X.
0.48 63.7 Os01g0788900 At5g50130 - TPR-like domain containing protein 6e-18 At1g69290 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.47 62.3 Os11g0109900 At5g50130 - Double-stranded RNA binding domain containingprotein 7e-38 At3g08850 RAPTOR1 O.I. H.G. S.X.
0.46 60.9 Os05g0247900 At5g50130 - SNF2-related domain containing protein 1e-7 At1g03750 SWI2 (SWITCH 2) O.I. H.G. S.X.
0.44 58.1 Os09g0542800 At5g50130 - TPR-like domain containing protein 2e-1 At3g61260 DNA-binding family protein / remorin family protein O.I. H.G. S.X.
0.37 45.0 Os07g0120700 At5g50130 - ARM repeat fold domain containing protein 3e-1 At1g51600 TIFY2A O.I. H.G. S.X.
0.27 27.5 Os10g0518900 At5g50130 - DNA repair protein rad10 family protein 2e-1 At4g01050 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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