Co-expression analysis

Gene ID Contig13168_at
Gene name
Homology with ArabidopsisSimilar to At5g50130: short-chain dehydrogenase/reductase (SDR) family protein (HF=3e+0)
Module size 6 genes
NF 0.54
%ile 75.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.97Contig13168_atContig13168--3e+0At5g50130short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.5066.90.96Contig6491_atContig6491--6e-1At5g02230haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.4458.90.96Contig13436_atContig13436--3e-1At3g23200unknown proteinO.I.H.G.S.X.
0.4458.90.97Contig25401_atContig25401--4e-3At1g78710unknown proteinO.I.H.G.S.X.
0.3647.10.97Contig23171_atContig23171--2e+0At1g11570nuclear transport factor 2 (NTF2), putativeO.I.H.G.S.X.
0.3138.60.96Contig11789_atContig11789--2e+0At3g04620nucleic acid bindingO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.897.8GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.897.8GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
3.595.1GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM261036Dicktoo-subzero-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
3.394.6GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
3.093.8GSM261024ABA-Early-rep1GSE10328ABA experimentLink to GEO
2.993.4GSM16082619% SWC rep3GSE6990Barley drought stressLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g50130, orthologous to the query gene, Contig13168_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.2930.3At5g50130835078short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAO.I.H.G.S.X.
0.4050.8At2g16580816158auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.H.G.S.X.
0.3338.1At5g53830835464VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFBMO.I.H.G.S.X.
0.2930.3At2g28510817399Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFBO.I.H.G.S.X.
0.2930.3At2g44830819092protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, nucleus;MOPFBVAO.I.H.G.S.X.
0.2217.5At5g43980834421PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1)Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The cytoplasmic C-terminal portion of the protein is connected to the apoplastic N-terminal portion of the protein by a single transmembrane domain (TMD). It is transported to the plasmodesmata through the secretory pathway. PDLP1 has two DUF26 domains and a signal peptide, but the proper localization of the protein appears to depend on the TMD.O.I.H.G.S.X.
0.1912.7At2g25790817121leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFAVO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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