Co-expression analysis

Gene ID Contig13002_at
Gene name
Homology with ArabidopsisSimilar to At1g45150: unknown protein (HF=2e-10)
Module size 6 genes
NF 0.61
%ile 83.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.97Contig13002_atContig13002--2e-10At1g45150unknown proteinO.I.H.G.S.X.
0.6784.70.97Contig7648_atContig7648--6e-1At1g12250thylakoid lumenal protein-relatedO.I.H.G.S.X.
0.6077.30.97Contig7067_atContig7067--2e-14At3g04240SEC (secret agent)O.I.H.G.S.X.
0.5572.00.96Contig4160_atContig4160--7e-17At4g04950thioredoxin family proteinO.I.H.G.S.X.
0.4762.20.96Contig10064_atContig10064--2e+0At2g12465LCR50 (Low-molecular-weight cysteine-rich 50)O.I.H.G.S.X.
0.4053.10.97Contig8146_atContig8146--6e-30At1g79830GC5 (golgin candidate 5)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.697.7GSM440968Stressed palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.396.4GSM440967Stressed palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.995.8GSM440966Stressed palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.895.7GSM440962Stressed lemma_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.795.5GSM440961Stressed lemma_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.695.3GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.194.1GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
2.893.1GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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