Co-expression analysis

Gene ID Contig12954_at
Gene name
Homology with ArabidopsisSimilar to At2g25060: plastocyanin-like domain-containing protein (HF=1e+0)
Module size 6 genes
NF 0.55
%ile 76.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.81Contig12954_atContig12954--1e+0At2g25060plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.8394.00.81Contig13191_atContig13191--6e+0At5g50200WR3 (WOUND-RESPONSIVE 3)O.I.H.G.S.X.
0.6077.30.81Contig7838_atContig7838--3e-41At4g00370ANTR2O.I.H.G.S.X.
0.5066.90.76Contig5627_atContig5627--3e+0At5g10140FLC (FLOWERING LOCUS C)O.I.H.G.S.X.
0.3647.10.81HVSMEc0004G20r2_atHVSMEc0004G20r2--1e+1At5g28610-O.I.H.G.S.X.
0.3138.60.83Contig11999_atContig11999--7e-1At2g24850TAT3 (TYROSINE AMINOTRANSFERASE 3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.397.4GSM398262HS41-1_0d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.696.8GSM311263kara_without_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
4.096.0GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.995.8GSM398263HS41-1_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.494.8GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.294.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM372984genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.792.7GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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