Co-expression analysis

Gene ID	Contig12938_at
Gene name
Homology with Arabidopsis	Similar to At1g36920: unknown protein (HF=1e+0)
Module size	7 genes
NF	0.45
%ile	63.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.96	Contig12938_at	Contig12938	-	-	1e+0	At1g36920	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	HVSMEa0009I06r2_at	HVSMEa0009I06r2	-	-	9e+0	At5g59060	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig5081_at	Contig5081	-	-	5e-7	At2g42910	ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig13002_at	Contig13002	-	-	2e-10	At1g45150	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.96	Contig9136_at	Contig9136	-	-	1e-5	At3g51140	-	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.96	Contig5644_at	Contig5644	-	-	3e-114	At3g58500	PP2A-3 (PROTEIN PHOSPHATASE 2A-3)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig10064_at	Contig10064	-	-	2e+0	At2g12465	LCR50 (Low-molecular-weight cysteine-rich 50)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	98.2	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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