Co-expression analysis

Gene ID	Contig12910_at
Gene name
Homology with Arabidopsis	Similar to At1g18590: SOT17 (SULFOTRANSFERASE 17) (HF=1e-1)
Module size	6 genes
NF	0.55
%ile	76.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.87	Contig12910_at	Contig12910	-	-	1e-1	At1g18590	SOT17 (SULFOTRANSFERASE 17)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.84	Contig3141_at	Contig3141	-	-	2e-27	At2g35690	ACX5 (ACYL-COA OXIDASE 5)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.84	Contig18763_at	Contig18763	-	-	1e-1	At5g54860	integral membrane transporter family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.87	rbaal21e22_x_at	rbaal21e22	-	-	1e+0	At3g61898	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.87	Contig5840_at	Contig5840	-	-	2e-2	At5g23570	SGS3 (SUPPRESSOR OF GENE SILENCING 3)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.87	Contig11812_at	Contig11812	-	-	2e-1	At3g51880	HMGB1 (HIGH MOBILITY GROUP B 1)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.9	99.5	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
11.5	99.3	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
11.5	99.3	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.4	98.8	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.7	98.3	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.1	98.0	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.3	97.4	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.6	96.8	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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