Co-expression analysis

Gene ID	Contig12873_at
Gene name
Homology with Arabidopsis	Similar to At5g50430: UBC33 (ubiquitin-conjugating enzyme 33) (HF=6e+0)
Module size	6 genes
NF	0.59
%ile	81.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.94	Contig12873_at	Contig12873	-	-	6e+0	At5g50430	UBC33 (ubiquitin-conjugating enzyme 33)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.94	Contig17320_at	Contig17320	-	-	1e-1	At3g61040	CYP76C7	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig6985_at	Contig6985	-	-	6e-9	At3g06610	DNA-binding enhancer protein-related	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.95	Contig20730_s_at	Contig20730	-	-	5e-3	At1g73885	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	Contig10947_at	Contig10947	-	-	2e+0	At5g27200	ACP5 (acyl carrier protein 5)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.94	Contig17334_at	Contig17334	-	-	3e-5	At1g72230	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.2	99.1	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
8.7	98.9	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.5	98.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.8	97.8	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.9	97.1	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.9	97.1	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.9	97.1	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage