Co-expression analysis

Gene ID	Contig12816_at
Gene name
Homology with Arabidopsis	Similar to At4g08455: BTB/POZ domain-containing protein (HF=1e-4)
Module size	7 genes
NF	0.34
%ile	46.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.4	0.96	Contig12816_at	Contig12816	-	-	1e-4	At4g08455	BTB/POZ domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig1660_at	Contig1660	-	-	6e-27	At4g15415	ATB' GAMMA	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	Contig12767_at	Contig12767	-	-	2e+0	At4g24660	ATHB22 (HOMEOBOX PROTEIN 22)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.97	Contig16156_s_at	Contig16156	-	-	1e-4	At1g71010	phosphatidylinositol-4-phosphate 5-kinase family protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.96	Contig7360_at	Contig7360	-	-	3e+0	At4g19620	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig11143_at	Contig11143	-	-	3e+0	At4g14810	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.96	Contig11475_at	Contig11475	-	-	1e-59	At3g11540	SPY (SPINDLY)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.0	99.3	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.9	99.3	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.4	99.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.4	98.1	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.7	97.7	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.0	97.2	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.4	96.6	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.2	94.3	GSM398281	Moroc9-75_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.1	94.1	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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