Co-expression analysis

Gene ID	Contig12807_at
Gene name
Homology with Arabidopsis	Similar to At3g14595: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.37
%ile	50.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.86	Contig12807_at	Contig12807	-	-	3e+0	At3g14595	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.88	Contig16261_at	Contig16261	-	-	4e-1	At4g24460	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.88	Contig19958_at	Contig19958	-	-	4e+0	At3g28990	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.87	Contig2165_at	Contig2165	-	-	9e-35	At4g13930	SHM4 (serine hydroxymethyltransferase 4)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.87	Contig21494_at	Contig21494	-	-	2e+0	At5g46730	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.86	Contig1625_s_at	Contig1625	-	-	2e-1	At3g29020	MYB110 (myb domain protein 110)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.5	98.8	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.5	98.8	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.0	98.4	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.0	98.4	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.9	97.1	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.5	96.7	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.1	96.2	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.0	96.0	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage