Co-expression analysis

Gene ID	Contig12796_at
Gene name
Homology with Arabidopsis	Similar to At5g39110: germin-like protein, putative (HF=5e-1)
Module size	6 genes
NF	0.36
%ile	48.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	0.93	Contig12796_at	Contig12796	-	-	5e-1	At5g39110	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig19125_at	Contig19125	-	-	4e-3	At2g33980	atnudt22 (Arabidopsis thaliana Nudix hydrolase homolog 22)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	HZ52M24r_s_at	HZ52M24r	-	-	4e-3	At5g58240	bis(5'-adenosyl)-triphosphatase, putative	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig12503_at	Contig12503	-	-	7e+0	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig24660_at	Contig24660	-	-	6e+0	Atmg00680	-	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	Contig5680_at	Contig5680	-	-	1e-1	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	98.9	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.4	96.6	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.8	95.7	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.5	95.1	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.5	95.1	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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