Co-expression analysis

Gene ID Contig12780_at
Gene name
Homology with ArabidopsisSimilar to At2g16575: unknown protein (HF=5e-1)
Module size 6 genes
NF 0.38
%ile 52.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.92Contig12780_atContig12780--5e-1At2g16575unknown proteinO.I.H.G.S.X.
0.5572.00.94rbags1k21_s_atrbags1k21--1e+0Atmg00940-O.I.H.G.S.X.
0.4458.90.95Contig9242_atContig9242--4e-18At3g06430EMB2750 (embryo defective 2750)O.I.H.G.S.X.
0.4356.40.94Contig9243_atContig9243--2e-4At4g27470zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3647.10.94Contig6269_atContig6269--1e+1At5g211705'-AMP-activated protein kinase beta-2 subunit, putativeO.I.H.G.S.X.
0.1716.90.93Contig15214_atContig15214--6e+0At4g31441unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.796.9GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.895.7GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.695.3GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.394.6GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.792.7GSM261069Albina f-17 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.692.3GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.591.9GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.591.9GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.591.9GSM372981genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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