Co-expression analysis

Gene ID	Contig12750_at
Gene name
Homology with Arabidopsis	Similar to At5g28630: glycine-rich protein (HF=5e-1)
Module size	6 genes
NF	0.91
%ile	99.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	Contig12750_at	Contig12750	-	-	5e-1	At5g28630	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.97	Contig5567_s_at	Contig5567	-	-	8e-35	At4g13430	IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.97	Contig3122_at	Contig3122	-	-	1e+0	At5g66815	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.96	Contig15825_at	Contig15825	-	-	8e+0	At5g03020	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.97	HA20A06r_at	HA20A06r	-	-	2e-1	At1g61820	BGLU46 (BETA GLUCOSIDASE 46)	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.96	Contig8260_s_at	Contig8260	-	-	2e+0	At1g65230	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.9	99.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.8	99.4	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.5	99.4	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.9	95.8	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.9	95.8	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
3.9	95.8	GSM261037	Dicktoo-subzero-rep2	GSE10329	Low temperature stress in cv. Dicktoo
3.9	95.8	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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