Co-expression analysis

Gene ID	Contig12737_at
Gene name
Homology with Arabidopsis	Similar to At5g48950: thioesterase family protein (HF=2e-3)
Module size	6 genes
NF	0.43
%ile	59.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.96	Contig12737_at	Contig12737	-	-	2e-3	At5g48950	thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig13127_at	Contig13127	-	-	2e+0	At4g24026	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig7277_at	Contig7277	-	-	3e-8	At5g11110	ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig4424_at	Contig4424	-	-	1e-5	At5g40150	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	HX01C23w_s_at	HX01C23w	-	-	5e+0	At5g17165	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	Contig15481_at	Contig15481	-	-	2e+0	At3g54170	ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	98.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.7	96.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.9	95.8	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the maize gene, Zm.8870.1.A1_at, orthologous to the query gene, Contig12737_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	Zm.8870.1.A1_at	At5g48950	acyl-CoA thioesterase/ catalytic/ hydrolase, acting on ester bonds	-	4e-1	At4g15620	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	Zm.4930.1.A1_at	At5g48950	-	-	2e-9	At2g27040	AGO4 (ARGONAUTE 4)	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.1974.1.A1_at	At5g48950	-	-	2e+1	At5g36100	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.18083.1.A1_at	At5g48950	-	-	1e-17	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.19362.1.S1_at	At5g48950	-	-	1e+0	At5g13440	ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.3308.1.A1_at	At5g48950	Hypothetical protein LOC100191678	-	2e-3	At4g26600	nucleolar protein, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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