Co-expression analysis

Gene ID	Contig12737_at
Gene name
Homology with Arabidopsis	Similar to At5g48950: thioesterase family protein (HF=2e-3)
Module size	6 genes
NF	0.43
%ile	59.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.96	Contig12737_at	Contig12737	-	-	2e-3	At5g48950	thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig13127_at	Contig13127	-	-	2e+0	At4g24026	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig7277_at	Contig7277	-	-	3e-8	At5g11110	ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig4424_at	Contig4424	-	-	1e-5	At5g40150	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	HX01C23w_s_at	HX01C23w	-	-	5e+0	At5g17165	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	Contig15481_at	Contig15481	-	-	2e+0	At3g54170	ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	98.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.7	96.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.9	95.8	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the grape gene, 1621137_at, orthologous to the query gene, Contig12737_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	91.0	1621137_at	At5g48950	hypothetical protein LOC100259669	-	1e-1	At1g48320	thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.86	95.1	1612713_at	At5g48950	similar to histone H3	-	3e-57	At5g10980	histone H3	O.I.	H.G.	S.X.	Please select
0.64	84.7	1606505_at	At5g48950	hypothetical protein LOC100257948	-	3e+0	At3g21570	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1609086_s_at	At5g48950	similar to F2D10.18	-	6e-16	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	O.I.	H.G.	S.X.	Please select
0.42	60.1	AFFX-Vvi-X03453-2_s_at	At5g48950	-	-				O.I.	H.G.	S.X.	Please select
0.40	57.7	1607202_s_at	At5g48950	hypothetical protein LOC100242295	-	2e-65	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	O.I.	H.G.	S.X.	Please select
0.36	50.7	AFFX-r2-P1-cre-5_at	At5g48950	-	-				O.I.	H.G.	S.X.	Please select
0.34	46.8	1611002_s_at	At5g48950	hypothetical protein LOC100246998	-	6e-13	At3g10210	-	O.I.	H.G.	S.X.	Please select
0.33	45.7	1622085_at	At5g48950	hypothetical protein LOC100262035	-	4e-4	At5g47730	SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.33	45.7	AFFX-CreX-3_at	At5g48950	-	-				O.I.	H.G.	S.X.	Please select
0.24	28.7	1615632_a_at	At5g48950	hypothetical protein LOC100262698	-	3e-13	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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