Co-expression analysis

Gene ID Contig12737_at
Gene name
Homology with ArabidopsisSimilar to At5g48950: thioesterase family protein (HF=2e-3)
Module size 6 genes
NF 0.43
%ile 59.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7388.70.96Contig12737_atContig12737--2e-3At5g48950thioesterase family proteinO.I.H.G.S.X.
0.6178.70.96Contig13127_atContig13127--2e+0At4g24026unknown proteinO.I.H.G.S.X.
0.4356.40.96Contig7277_atContig7277--3e-8At5g11110ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)O.I.H.G.S.X.
0.3342.60.96Contig4424_atContig4424--1e-5At5g40150peroxidase, putativeO.I.H.G.S.X.
0.3037.00.96HX01C23w_s_atHX01C23w--5e+0At5g17165unknown proteinO.I.H.G.S.X.
0.2732.10.96Contig15481_atContig15481--2e+0At3g54170ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.598.2GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.797.7GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.397.4GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.796.9GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM238422Endosperm 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM238425Endosperm 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.995.8GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0691400, orthologous to the query gene, Contig12737_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7793.1Os03g0691400At5g48950-Thioesterase superfamily domain containing protein1e-4At5g48950thioesterase family proteinO.I.H.G.S.X.
0.4051.1Os07g0656800At5g48950-Conserved hypothetical protein3e+0At5g66470GTP binding / RNA bindingO.I.H.G.S.X.
0.3134.5Os07g0657400At5g48950-Protein of unknown function DUF563 family protein7e-5At2g41640transferase, transferring glycosyl groupsO.I.H.G.S.X.
0.2931.1Os03g0249700At5g48950--2e+0At4g39360unknown proteinO.I.H.G.S.X.
0.2219.4Os06g0175500At5g48950-Epsin, N-terminal domain containing protein8e-11At5g35200epsin N-terminal homology (ENTH) domain-containing proteinO.I.H.G.S.X.
0.2117.9Os06g0238300At5g48950-FMN-binding split barrel domain containing protein2e+0At5g54490PBP1 (PINOID-BINDING PROTEIN 1)O.I.H.G.S.X.
0.042.0Os01g0784800At5g48950-Minor allergen4e-14At5g54500FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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