Co-expression analysis

Gene ID	Contig12731_at
Gene name
Homology with Arabidopsis	Similar to At3g59380: FTA (FARNESYLTRANSFERASE A) (HF=2e-4)
Module size	7 genes
NF	0.27
%ile	34.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	63.2	0.94	Contig12731_at	Contig12731	-	-	2e-4	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	Contig14726_at	Contig14726	-	-	2e+0	At3g10020	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.94	Contig16121_at	Contig16121	-	-	1e-1	At5g35580	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig14780_at	Contig14780	-	-	3e-1	At2g35960	NHL12	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	HU05P16u_s_at	HU05P16u	-	-	4e+0	At3g29670	transferase family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig8938_at	Contig8938	-	-	7e-9	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.94	Contig11352_at	Contig11352	-	-	3e-5	At3g56120	Met-10+ like family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.0	99.3	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
11.0	99.2	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.5	98.6	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.1	98.4	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.8	97.8	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.6	97.7	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.6	97.7	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.5	97.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.3	97.4	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.1	97.3	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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