Co-expression analysis

Gene ID	Contig12717_at
Gene name
Homology with Arabidopsis	Similar to At5g60990: DEAD/DEAH box helicase, putative (RH10) (HF=2e-4)
Module size	9 genes
NF	0.22
%ile	27.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	86.0	0.95	Contig12717_at	Contig12717	-	-	2e-4	At5g60990	DEAD/DEAH box helicase, putative (RH10)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig694_at	Contig694	-	-	5e-6	At1g32900	starch synthase, putative	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.97	Contig3636_at	Contig3636	-	-	9e-9	At5g21090	leucine-rich repeat protein, putative	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	Contig12335_at	Contig12335	-	-	5e-20	At2g22120	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.96	Contig5612_at	Contig5612	-	-	3e-3	At3g47350	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	Contig333_3_x_at	Contig333_3	-	-			-	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.96	Contig6910_at	Contig6910	-	-	9e-4	At5g43590	patatin, putative	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.96	Contig8826_at	Contig8826	-	-	4e+0	At3g58830	haloacid dehalogenase (HAD) superfamily protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.96	Contig3120_at	Contig3120	-	-	4e-2	At4g20260	DREPP plasma membrane polypeptide family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	98.2	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.6	98.2	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.2	97.4	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.9	97.1	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.8	97.0	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.7	96.9	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.7	96.9	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.3	94.6	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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