Co-expression analysis

Gene ID	Contig12710_at
Gene name
Homology with Arabidopsis	Similar to At3g10405: unknown protein (HF=4e-5)
Module size	6 genes
NF	0.08
%ile	10.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.92	Contig12710_at	Contig12710	-	-	4e-5	At3g10405	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.94	HW07J16u_at	HW07J16u	-	-	2e-1	At5g39645	-	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	HVSMEh0082A13r2_s_at	HVSMEh0082A13r2	-	-	3e+0	At1g63120	ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig14749_at	Contig14749	-	-	2e+0	At5g05365	metal ion binding	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.94	Contig8495_at	Contig8495	-	-	2e-5	At2g24740	SDG21 (SET DOMAIN GROUP 21)	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.94	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.7	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.8	98.6	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.3	98.5	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.5	97.6	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.3	97.4	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.3	97.4	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.9	97.1	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.6	96.8	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage