Co-expression analysis

Gene ID Contig12710_at
Gene name
Homology with ArabidopsisSimilar to At3g10405: unknown protein (HF=4e-5)
Module size 6 genes
NF 0.08
%ile 10.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.92Contig12710_atContig12710--4e-5At3g10405unknown proteinO.I.H.G.S.X.
0.4356.40.94HW07J16u_atHW07J16u--2e-1At5g39645-O.I.H.G.S.X.
0.3647.10.94HVSMEh0082A13r2_s_atHVSMEh0082A13r2--3e+0At1g63120ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)O.I.H.G.S.X.
0.3138.60.95Contig14749_atContig14749--2e+0At5g05365metal ion bindingO.I.H.G.S.X.
0.054.10.94Contig8495_atContig8495--2e-5At2g24740SDG21 (SET DOMAIN GROUP 21)O.I.H.G.S.X.
0.021.80.94EBem04_SQ003_H15_atEBem04_SQ003_H15--3e+0At5g33806unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.298.7GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
7.898.6GSM440968Stressed palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
7.398.5GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.897.8GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.597.6GSM440967Stressed palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.397.4GSM440966Stressed palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.397.4GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM431571pathogen isolates: Polymyxa betae - rep1GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.997.1GSM431573pathogen isolates: Polymyxa betae - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.696.8GSM440961Stressed lemma_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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