Co-expression analysis

Gene ID	Contig12675_s_at
Gene name
Homology with Arabidopsis	Similar to At4g28150: unknown protein (HF=1e+0)
Module size	10 genes
NF	0.80
%ile	96.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	87.4	0.90	Contig12675_s_at	Contig12675	-	-	1e+0	At4g28150	unknown protein	O.I.	H.G.	S.X.	Please select
0.89	95.4	0.94	Contig3729_at	Contig3729	-	-	7e+0	At5g60560	F-box family protein	O.I.	H.G.	S.X.	Please select
0.82	93.1	0.93	Contig17811_at	Contig17811	-	-	4e+0	At2g05590	-	O.I.	H.G.	S.X.	Please select
0.82	93.1	0.91	Contig8003_at	Contig8003	-	-	2e+0	At5g22100	RNA cyclase family protein	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.90	Contig16285_at	Contig16285	-	-	8e-2	At4g31390	ABC1 family protein	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.90	Contig11985_at	Contig11985	-	-	3e-2	At5g18310	unknown protein	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.91	Contig9574_at	Contig9574	-	-	8e-9	At1g17330	metal-dependent phosphohydrolase HD domain-containing protein-related	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.91	HZ01L11u_at	HZ01L11u	-	-	3e+0	At4g26240	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.89	Contig1339_at	Contig1339	-	-	4e-66	At3g56800	CAM3 (CALMODULIN 3)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.89	Contig3728_at	Contig3728	-	-	9e-28	At3g62560	GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	99.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.7	99.0	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.7	97.7	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.5	97.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.5	95.1	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage