Co-expression analysis

Gene ID	Contig125_at
Gene name
Homology with Arabidopsis	Similar to At4g25720: QC (GLUTAMINYL CYCLASE) (HF=2e+0)
Module size	7 genes
NF	0.44
%ile	61.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.97	Contig125_at	Contig125	-	-	2e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	Contig14753_at	Contig14753	-	-	4e-7	At5g38060	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.96	Contig15156_at	Contig15156	-	-	2e+0	At1g48210	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.97	Contig3633_s_at	Contig3633	-	-	7e-1	At3g13480	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.96	Contig5226_at	Contig5226	-	-	1e-1	At1g79790	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig5664_at	Contig5664	-	-	1e-2	At1g25450	KCS5 (3-KETOACYL-COA SYNTHASE 5)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	Contig725_s_at	Contig725	-	-	1e-15	At1g21750	ATPDIL1-1 (PDI-LIKE 1-1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.1	99.3	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
9.7	99.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.4	98.5	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.1	98.4	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.5	98.2	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
6.4	98.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.3	98.1	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.3	98.1	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
5.5	97.6	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.5	96.7	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

A co-expression module including the wheat gene, Ta.23041.1.S1_at, orthologous to the query gene, Contig125_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	76.8	Ta.23041.1.S1_at	At4g25720	-	-	7e+0	At4g01410	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.71	88.0	Ta.25256.1.A1_at	At4g25720	-	-	3e-1	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	O.I.	H.G.	S.X.	Please select
0.71	88.0	Ta.1151.1.S1_at	At4g25720	-	-	2e-1	At2g18670	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.13070.2.S1_x_at	At4g25720	Non-specific lipid transfer protein 1 precursor	-	3e-1	At5g27520	PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2)	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.13070.1.S1_at	At4g25720	Non-specific lipid transfer protein 1 precursor	-	4e-1	At5g27520	PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2)	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.13070.2.S1_a_at	At4g25720	non-specific lipid transfer protein 1 precursor	-	3e-1	At5g27520	PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2)	O.I.	H.G.	S.X.	Please select
0.63	83.1	Ta.20804.1.S1_at	At4g25720	-	-	1e+0	At1g62250	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	79.8	Ta.20804.1.S1_x_at	At4g25720	-	-	1e+0	At1g62250	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	TaAffx.110060.1.S1_at	At4g25720	-	-	5e+0	At5g43600	UAH (UREIDOGLYCOLATE AMIDOHYDROLASE)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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