Co-expression analysis

Gene ID	Contig125_at
Gene name
Homology with Arabidopsis	Similar to At4g25720: QC (GLUTAMINYL CYCLASE) (HF=2e+0)
Module size	7 genes
NF	0.44
%ile	61.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.97	Contig125_at	Contig125	-	-	2e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	Contig14753_at	Contig14753	-	-	4e-7	At5g38060	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.96	Contig15156_at	Contig15156	-	-	2e+0	At1g48210	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.97	Contig3633_s_at	Contig3633	-	-	7e-1	At3g13480	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.96	Contig5226_at	Contig5226	-	-	1e-1	At1g79790	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig5664_at	Contig5664	-	-	1e-2	At1g25450	KCS5 (3-KETOACYL-COA SYNTHASE 5)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	Contig725_s_at	Contig725	-	-	1e-15	At1g21750	ATPDIL1-1 (PDI-LIKE 1-1)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.1	99.3	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
9.7	99.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.4	98.5	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.1	98.4	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.5	98.2	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
6.4	98.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.3	98.1	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.3	98.1	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
5.5	97.6	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.5	96.7	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.222343.1.S1_at, orthologous to the query gene, Contig125_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	PtpAffx.222343.1.S1_at	At4g25720	hypothetical protein	-	5e+0	At5g50250	31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.204862.1.S1_at	At4g25720	hypothetical protein	-	4e+0	At5g56990	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.214021.1.S1_at	At4g25720	hypothetical protein	-	2e-1	At2g40085	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.108063.1.A1_at	At4g25720	-	-	8e-1	At2g21080	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.204094.1.S1_at	At4g25720	hypothetical protein	-	6e+0	At4g38660	thaumatin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.96019.1.A1_at	At4g25720	hypothetical protein	-	6e-9	At2g39590	40S ribosomal protein S15A (RPS15aC)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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