Co-expression analysis

Gene ID Contig125_at
Gene name
Homology with ArabidopsisSimilar to At4g25720: QC (GLUTAMINYL CYCLASE) (HF=2e+0)
Module size 7 genes
NF 0.44
%ile 61.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.50.97Contig125_atContig125--2e+0At4g25720QC (GLUTAMINYL CYCLASE)O.I.H.G.S.X.
0.6380.30.96Contig14753_atContig14753--4e-7At5g38060unknown proteinO.I.H.G.S.X.
0.5975.80.96Contig15156_atContig15156--2e+0At1g48210serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.5975.80.97Contig3633_s_atContig3633--7e-1At3g13480unknown proteinO.I.H.G.S.X.
0.3747.90.96Contig5226_atContig5226--1e-1At1g79790haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.3545.10.96Contig5664_atContig5664--1e-2At1g25450KCS5 (3-KETOACYL-COA SYNTHASE 5)O.I.H.G.S.X.
0.1919.60.96Contig725_s_atContig725--1e-15At1g21750ATPDIL1-1 (PDI-LIKE 1-1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.199.3GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
9.799.0GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.498.5GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.198.4GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
6.598.2GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
6.498.1GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.398.1GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
6.398.1GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
5.597.6GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.596.7GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g25720, orthologous to the query gene, Contig125_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At4g25720828677QC (GLUTAMINYL CYCLASE)This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Enzymatic assays to test the function of this protein were performed using a truncated form of the protein lacking a signal peptide that is most similar to the AT4G25720.1 protein model.O.I.H.G.S.X.
0.3745.0At1g20575838646dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putativeF:elongation factor-2 kinase activity, dolichyl-phosphate beta-D-mannosyltransferase activity;P:protein amino acid glycosylation;C:endoplasmic reticulum;BOAMFPVO.I.H.G.S.X.
0.3745.0At5g46630834706clathrin adaptor complexes medium subunit family proteinclathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family; similar to micro-adaptins of clathrin coated vesicle adaptor complexesO.I.H.G.S.X.
0.3745.0At2g47970819409NPL4 family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.3643.6At4g24550828557clathrin adaptor complexes medium subunit family proteinF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat, clathrin adaptor complex;MFOPO.I.H.G.S.X.
0.3541.6At4g17270827441Mo25 family proteinF:binding;P:biological_process unknown;C:plasma membrane;MFPOO.I.H.G.S.X.
0.3439.8At4g27690828883VPS26B (VACUOLAR PROTEIN SORTING 26B)F:molecular_function unknown;P:intracellular protein transport, vacuolar transport, retrograde transport, endosome to Golgi;C:retromer complex;MOFPO.I.H.G.S.X.
0.3338.1At4g29960829119unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PFO.I.H.G.S.X.
0.3235.7At3g60800825251zinc finger (DHHC type) family proteinF:zinc ion binding;P:biological_process unknown;C:unknown;MOFPO.I.H.G.S.X.
0.3235.7At3g59920825162ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)RAB GDP DISSOCIATION INHIBITOR 2O.I.H.G.S.X.
0.3235.7At5g52210835297ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1)A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.O.I.H.G.S.X.
0.3133.8At1g26940839584peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinF:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:endomembrane system;BOMFPAO.I.H.G.S.X.
0.3032.1At5g47420834789-F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;BOAPFO.I.H.G.S.X.
0.3032.1At1g61150842408-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.2930.3At2g25280817066-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BAMOFPO.I.H.G.S.X.
0.2930.3At1g05720837079selenoprotein family proteinF:selenium binding;P:biological_process unknown;C:endomembrane system;MPOO.I.H.G.S.X.
0.2830.3At1g52600841692signal peptidase, putativeF:peptidase activity;P:proteolysis, signal peptide processing;C:endoplasmic reticulum, plasma membrane, membrane;MBFOAPO.I.H.G.S.X.
0.2830.3At3g06540819832GDP dissociation inhibitor family protein / Rab GTPase activator family proteinF:RAB GDP-dissociation inhibitor activity;P:intracellular protein transport, regulation of GTPase activity, protein transport;C:cellular_component unknown;MFOPBO.I.H.G.S.X.
0.2726.2At2g47760819388ALG3F:alpha-1,3-mannosyltransferase activity, catalytic activity;P:protein amino acid glycosylation;C:endoplasmic reticulum;MFOPABO.I.H.G.S.X.
0.2522.6At4g11260826728SGT1BFunctions in plant disease resistance signaling, SCF(TIR1) mediated degradation of Aux/IAA proteins and HSP90 mediated degradation of R resistance proteins. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly expressed than AtSGT1. The N-terminal TPR domain of AtSGT1a reduces the steady-state level of Arabidopsis SGT1 proteins whereas the same domain from AtSGT1b enhances SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance.O.I.H.G.S.X.
0.2522.6At1g71860843516PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)Encodes a protein with tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress.O.I.H.G.S.X.
0.2522.6At3g18430821372calcium-binding EF hand family proteinF:calcium ion binding;P:N-terminal protein myristoylation;C:vacuole;MPOFBO.I.H.G.S.X.
0.2522.6At3g16110820856ATPDIL1-6 (PDI-LIKE 1-6)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin).O.I.H.G.S.X.
0.2420.7At1g05350837034thiF family proteinF:binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity, cofactor binding;P:metabolic process;C:cellular_component unknown;BOMFPAO.I.H.G.S.X.
0.2319.3At5g10780830945-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.2319.3At4g30480829171tetratricopeptide repeat (TPR)-containing proteinF:binding;P:unknown;C:cellular_component unknown;MOPFBAVO.I.H.G.S.X.
0.2319.3At4g17486827462unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.2217.5At3g15710820814signal peptidase, putativeF:peptidase activity;P:proteolysis, signal peptide processing;C:endoplasmic reticulum, plasma membrane, membrane;MFOBAPO.I.H.G.S.X.
0.2115.8At1g10430837583PP2A-2Encodes one of two isoforms of the catalytic subunit of protein phosphatase 2A.O.I.H.G.S.X.
0.2014.4At4g24330828536unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MFOPBO.I.H.G.S.X.
0.2014.4At1g78920844231AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2)vacuolar-type H+-translocating inorganic pyrophosphataseO.I.H.G.S.X.
0.2014.4At2g37550818331AGD7A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.O.I.H.G.S.X.
0.2014.4At3g48760824037zinc finger (DHHC type) family proteinF:zinc ion binding;P:biological_process unknown;C:plasma membrane;MOFPO.I.H.G.S.X.
0.1912.7At1g01910839305anion-transporting ATPase, putativeF:ATP binding;P:cellular metal ion homeostasis, anion transport;C:membrane;BOMAFPO.I.H.G.S.X.
0.1811.4At5g08290830725YLS8Encodes Dim1 homolog.O.I.H.G.S.X.
0.1811.4At2g27600817306SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function.O.I.H.G.S.X.
0.1811.4At5g58710835985ROC7Encodes cyclophilin ROC7.O.I.H.G.S.X.
0.1710.2At3g52300824395ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)F:hydrogen ion transmembrane transporter activity;P:response to salt stress;C:in 8 components;MPFOO.I.H.G.S.X.
0.1710.2At3g05530819718RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.O.I.H.G.S.X.
0.1710.2At1g65270842834unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum, plasma membrane;MPOO.I.H.G.S.X.
0.1710.2At2g36360818209kelch repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBAO.I.H.G.S.X.
0.168.8At3g02520821060GRF7 (GENERAL REGULATORY FACTOR 7)Encodes GF14 ν, a 14-3-3 protein isoform (14-3-3ν).O.I.H.G.S.X.
0.168.8At5g58030835915transport protein particle (TRAPP) component Bet3 family proteinF:molecular_function unknown;P:ER to Golgi vesicle-mediated transport;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.092.8At4g31480829275coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putativeF:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, endomembrane system, COPI vesicle coat;MOFPO.I.H.G.S.X.
0.082.3At4g24940828596SAE1A (SUMO-ACTIVATING ENZYME 1A)Encodes one of the two subunits of the SUMO activation enzyme required during sumolation. Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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