Co-expression analysis

Gene ID Contig12592_at
Gene name
Homology with ArabidopsisSimilar to At4g26070: MEK1 (MAP KINASE/ ERK KINASE 1) (HF=6e+0)
Module size 6 genes
NF 0.49
%ile 69.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6380.30.82Contig12592_atContig12592--6e+0At4g26070MEK1 (MAP KINASE/ ERK KINASE 1)O.I.H.G.S.X.
0.5369.70.83Contig61_s_atContig61--5e-3At3g06780glycine-rich proteinO.I.H.G.S.X.
0.4661.00.86Contig2043_s_atContig2043--1e+0At2g35270DNA-binding protein-relatedO.I.H.G.S.X.
0.4458.90.85Contig21949_s_atContig21949--1e+0At5g37660PDLP7 (PLASMODESMATA-LOCATED PROTEIN 7)O.I.H.G.S.X.
0.4255.20.86Contig6997_atContig6997--2e-1At4g39140protein binding / zinc ion bindingO.I.H.G.S.X.
0.3342.60.86Contig20580_atContig20580--7e+0At3g18560unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.699.3GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
10.699.2GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
9.799.0GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.097.2GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.997.1GSM261075Albina e-16 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.995.8GSM261077Albina e-16 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.394.6GSM372981genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.394.6GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.194.1GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.792.7GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.12743.1.A1_at, orthologous to the query gene, Contig12592_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7087.2TaAffx.12743.1.A1_atAt4g26070--4e+0At3g42790AL3 (ALFIN-LIKE 3)O.I.H.G.S.X.
0.6483.6Ta.6008.1.S1_x_atAt4g26070--4e-37At5g54310AGD5 (ARF-GAP domain 5)O.I.H.G.S.X.
0.6282.3Ta.6008.3.S1_atAt4g26070--4e+0At4g30550glutamine amidotransferase class-I domain-containing proteinO.I.H.G.S.X.
0.6182.0TaAffx.29359.1.S1_atAt4g26070--3e+0At5g48605-O.I.H.G.S.X.
0.6182.0Ta.10446.1.S1_atAt4g26070--6e-1At1g62980ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18)O.I.H.G.S.X.
0.6081.0Ta.5802.1.S1_atAt4g26070--7e-21At1g22620ATSAC1 (suppressor of actin 1)O.I.H.G.S.X.
0.5374.9Ta.3730.1.S1_atAt4g26070--4e-8At1g12360KEU (keule)O.I.H.G.S.X.
0.5173.0Ta.700.1.S1_atAt4g26070--2e-1At5g10190transporter-relatedO.I.H.G.S.X.
0.4666.8Ta.4954.1.S1_atAt4g26070--3e+0At5g47180vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.4464.5Ta.12251.1.S1_x_atAt4g26070--6e-20At1g17280UBC34 (ubiquitin-conjugating enzyme 34)O.I.H.G.S.X.
0.4464.5Ta.3041.1.S1_atAt4g26070--2e-1At5g26080proline-rich family proteinO.I.H.G.S.X.
0.4362.2Ta.9195.3.S1_atAt4g26070--3e+0At1g78630emb1473 (embryo defective 1473)O.I.H.G.S.X.
0.4058.4Ta.12251.3.S1_x_atAt4g26070--8e-1At5g47210nuclear RNA-binding protein, putativeO.I.H.G.S.X.
0.3854.7Ta.23381.1.S1_atAt4g26070--6e-1At1g16240SYP51 (SYNTAXIN OF PLANTS 51)O.I.H.G.S.X.
0.3753.0Ta.4260.1.S1_atAt4g26070--3e-9At2g35680dual specificity protein phosphatase family proteinO.I.H.G.S.X.
0.3753.0Ta.5522.1.S1_atAt4g26070--1e-5At1g32400TOM2A (TOBAMOVIRUS MULTIPLICATION 2A)O.I.H.G.S.X.
0.3549.8Ta.16078.1.A1_atAt4g26070--1e-1At1g79430APL (ALTERED PHLOEM DEVELOPMENT)O.I.H.G.S.X.
0.3346.9Ta.3038.1.S1_atAt4g26070--2e+0At4g18180glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinO.I.H.G.S.X.
0.3244.4Ta.2264.1.S1_s_atAt4g26070--4e-29At3g26670-O.I.H.G.S.X.
0.2633.6Ta.6894.1.S1_atAt4g26070--1e+0At3g56540serine carboxypeptidase, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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