Co-expression analysis

Gene ID Contig12592_at
Gene name
Homology with ArabidopsisSimilar to At4g26070: MEK1 (MAP KINASE/ ERK KINASE 1) (HF=6e+0)
Module size 6 genes
NF 0.49
%ile 69.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6380.30.82Contig12592_atContig12592--6e+0At4g26070MEK1 (MAP KINASE/ ERK KINASE 1)O.I.H.G.S.X.
0.5369.70.83Contig61_s_atContig61--5e-3At3g06780glycine-rich proteinO.I.H.G.S.X.
0.4661.00.86Contig2043_s_atContig2043--1e+0At2g35270DNA-binding protein-relatedO.I.H.G.S.X.
0.4458.90.85Contig21949_s_atContig21949--1e+0At5g37660PDLP7 (PLASMODESMATA-LOCATED PROTEIN 7)O.I.H.G.S.X.
0.4255.20.86Contig6997_atContig6997--2e-1At4g39140protein binding / zinc ion bindingO.I.H.G.S.X.
0.3342.60.86Contig20580_atContig20580--7e+0At3g18560unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.699.3GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
10.699.2GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
9.799.0GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.097.2GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.997.1GSM261075Albina e-16 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.995.8GSM261077Albina e-16 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.394.6GSM372981genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.394.6GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.194.1GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.792.7GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os01g0120500, orthologous to the query gene, Contig12592_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7893.4Os01g0120500At4g26070-Conserved hypothetical protein1e-1At1g18060unknown proteinO.I.H.G.S.X.
0.6181.2Os03g0729200At4g26070-Conserved hypothetical protein6e-1At5g65840-O.I.H.G.S.X.
0.6181.2Os07g0260300At4g26070-Thioredoxin-like domain containing protein2e-4At1g21350antioxidant/ oxidoreductaseO.I.H.G.S.X.
0.5978.0Os06g0646000At4g26070-SAM (and some other nucleotide) binding motifdomain containing protein7e-1At2g41040methyltransferase-relatedO.I.H.G.S.X.
0.5777.0Os01g0552300At4g26070-Protein phosphatase-2C5e-11At4g27800protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1)O.I.H.G.S.X.
0.4558.8Os09g0249900At4g26070-Ferredoxin-thioredoxin reductase (Fragment)2e-18At2g04700ferredoxin thioredoxin reductase catalytic beta chain family proteinO.I.H.G.S.X.
0.4458.1Os02g0567100At4g26070-Thioredoxin-related domain containing protein7e+0At5g28820unknown proteinO.I.H.G.S.X.
0.3745.0Os08g0359000At4g26070-Conserved hypothetical protein2e-4At5g38660APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)O.I.H.G.S.X.
0.3338.8Os02g0643500At4g26070-Pentapeptide repeat containing protein6e-13At1g12250thylakoid lumenal protein-relatedO.I.H.G.S.X.
0.3134.5Os01g0682500At4g26070-Conserved hypothetical protein2e-23At1g80380phosphoribulokinase/uridine kinase-relatedO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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