Co-expression analysis

Gene ID	Contig12592_at
Gene name
Homology with Arabidopsis	Similar to At4g26070: MEK1 (MAP KINASE/ ERK KINASE 1) (HF=6e+0)
Module size	6 genes
NF	0.49
%ile	69.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.82	Contig12592_at	Contig12592	-	-	6e+0	At4g26070	MEK1 (MAP KINASE/ ERK KINASE 1)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.83	Contig61_s_at	Contig61	-	-	5e-3	At3g06780	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.86	Contig2043_s_at	Contig2043	-	-	1e+0	At2g35270	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.85	Contig21949_s_at	Contig21949	-	-	1e+0	At5g37660	PDLP7 (PLASMODESMATA-LOCATED PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.86	Contig6997_at	Contig6997	-	-	2e-1	At4g39140	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.86	Contig20580_at	Contig20580	-	-	7e+0	At3g18560	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.6	99.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.6	99.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.7	99.0	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.0	97.2	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.9	97.1	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.3	94.6	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.1	94.1	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.7	92.7	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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