Co-expression analysis

Gene ID	Contig12566_at
Gene name
Homology with Arabidopsis	Similar to At1g08845: structural constituent of ribosome (HF=9e-3)
Module size	14 genes
NF	0.46
%ile	64.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	91.4	0.81	Contig12566_at	Contig12566	-	-	9e-3	At1g08845	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.80	Contig24429_at	Contig24429	-	-	2e+0	At5g39220	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.81	Contig21626_at	Contig21626	-	-	4e+0	At5g59440	ZEU1 (ZEUS1)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.87	Contig15721_at	Contig15721	-	-	1e+0	At5g59360	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.79	Contig18_s_at	Contig18	-	-	8e-2	At5g25940	early nodulin-related	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.84	Contig21103_at	Contig21103	-	-	1e+0	At3g07880	Rho GDP-dissociation inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.88	Contig9101_s_at	Contig9101	-	-	7e+0	At5g23930	mitochondrial transcription termination factor-related / mTERF-related	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.87	Contig9009_s_at	Contig9009	-	-	4e-1	At3g10116	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.86	Contig14721_at	Contig14721	-	-	5e+0	At4g15670	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.83	Contig3986_s_at	Contig3986	-	-	6e-2	At4g13450	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.87	Contig8340_at	Contig8340	-	-	8e-3	At2g41190	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.87	Contig9975_at	Contig9975	-	-	1e+0	At1g27435	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.87	Contig16253_at	Contig16253	-	-	7e+0	At5g48515	-	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.83	Contig5825_s_at	Contig5825	-	-	6e-2	At1g36050	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	97.3	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.0	96.0	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
3.7	95.5	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
3.5	95.1	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.3	94.6	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3	94.6	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
3.2	94.3	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM146360	Golden Promise Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2	94.3	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
3.0	93.8	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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