Co-expression analysis

Gene ID Contig12544_s_at
Gene name
Homology with ArabidopsisSimilar to At5g03100: F-box family protein (HF=2e+1)
Module size 25 genes
NF 0.50
%ile 70.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7086.00.94Contig12544_s_atContig12544--2e+1At5g03100F-box family proteinO.I.H.G.S.X.
0.6885.10.95HVSMEg0004N03r2_atHVSMEg0004N03r2--2e+0At3g50360ATCEN2 (CENTRIN2)O.I.H.G.S.X.
0.5975.80.94HU12B19u_atHU12B19u--3e+0At2g03430ankyrin repeat family proteinO.I.H.G.S.X.
0.5874.90.95HU14H15r_atHU14H15r--6e-2At2g36320zinc finger (AN1-like) family proteinO.I.H.G.S.X.
0.5674.30.96AF474072_CDS-4_atAF474072_CDS-4--1e+0At5g05810ATL43O.I.H.G.S.X.
0.5470.30.95HO09J15S_atHO09J15S--9e+0At5g40630ubiquitin family proteinO.I.H.G.S.X.
0.5470.30.96HVSMEa0012H02f2_atHVSMEa0012H02f2--4e+0At3g02555unknown proteinO.I.H.G.S.X.
0.5369.70.95HM11C20r_atHM11C20r--4e+0At3g55890yippee family proteinO.I.H.G.S.X.
0.5268.30.96EBro08_SQ001_H04_atEBro08_SQ001_H04--1e+1At5g23027unknown proteinO.I.H.G.S.X.
0.5268.30.95Contig1829_atContig1829--1e-2At2g15490UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4)O.I.H.G.S.X.
0.5268.30.96V00087.1_atV00087.1--3e-1At5g43525-O.I.H.G.S.X.
0.5066.90.95EBro02_SQ001_G12_atEBro02_SQ001_G12--6e-2At2g24190short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.4863.20.95rbaal4l02_atrbaal4l02--6e-3At5g09640SCPL19O.I.H.G.S.X.
0.4863.20.95EBro08_SQ009_F01_atEBro08_SQ009_F01--2e-1At1g70490ARFA1DO.I.H.G.S.X.
0.4661.00.94Contig14647_atContig14647--4e-2At3g24506unknown proteinO.I.H.G.S.X.
0.4458.90.97HVSMEg0002G01r2_x_atHVSMEg0002G01r2--6e+0At5g39360EDL2 (EID1-like 2)O.I.H.G.S.X.
0.4458.90.96Contig25667_x_atContig25667--7e-1At1g24000Bet v I allergen family proteinO.I.H.G.S.X.
0.4458.90.96HY02C19u_atHY02C19u--5e+0At4g15610integral membrane family proteinO.I.H.G.S.X.
0.4255.20.96EBro02_SQ008_P15_atEBro02_SQ008_P15--1e+1At5g43211unknown proteinO.I.H.G.S.X.
0.4255.20.95Contig24225_atContig24225--2e-12At3g10360APUM4 (Arabidopsis Pumilio 4)O.I.H.G.S.X.
0.4153.90.969507414_R_4264-4644_at9507414_R_4264-4644--1e+1At5g06320NHL3O.I.H.G.S.X.
0.4153.90.96Contig17900_atContig17900--6e+0At4g05170DNA binding / transcription factorO.I.H.G.S.X.
0.3950.50.96HY06F24u_x_atHY06F24u--1e+1At5g05710pleckstrin homology (PH) domain-containing proteinO.I.H.G.S.X.
0.3747.90.96Contig10097_atContig10097--4e-1At3g16450jacalin lectin family proteinO.I.H.G.S.X.
0.3747.90.97EBem04_SQ003_H15_atEBem04_SQ003_H15--3e+0At5g33806unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.496.6GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.795.5GSM146366Maythorpe Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.795.5GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.494.8GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.494.8GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM372984genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.394.6GSM146360Golden Promise Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.093.8GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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