Co-expression analysis

Gene ID	Contig12544_s_at
Gene name
Homology with Arabidopsis	Similar to At5g03100: F-box family protein (HF=2e+1)
Module size	25 genes
NF	0.50
%ile	70.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	86.0	0.94	Contig12544_s_at	Contig12544	-	-	2e+1	At5g03100	F-box family protein	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.95	HVSMEg0004N03r2_at	HVSMEg0004N03r2	-	-	2e+0	At3g50360	ATCEN2 (CENTRIN2)	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.94	HU12B19u_at	HU12B19u	-	-	3e+0	At2g03430	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.95	HU14H15r_at	HU14H15r	-	-	6e-2	At2g36320	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.96	AF474072_CDS-4_at	AF474072_CDS-4	-	-	1e+0	At5g05810	ATL43	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.95	HO09J15S_at	HO09J15S	-	-	9e+0	At5g40630	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.96	HVSMEa0012H02f2_at	HVSMEa0012H02f2	-	-	4e+0	At3g02555	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.95	HM11C20r_at	HM11C20r	-	-	4e+0	At3g55890	yippee family protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.96	EBro08_SQ001_H04_at	EBro08_SQ001_H04	-	-	1e+1	At5g23027	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.95	Contig1829_at	Contig1829	-	-	1e-2	At2g15490	UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4)	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.96	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	EBro02_SQ001_G12_at	EBro02_SQ001_G12	-	-	6e-2	At2g24190	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.95	rbaal4l02_at	rbaal4l02	-	-	6e-3	At5g09640	SCPL19	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.95	EBro08_SQ009_F01_at	EBro08_SQ009_F01	-	-	2e-1	At1g70490	ARFA1D	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.94	Contig14647_at	Contig14647	-	-	4e-2	At3g24506	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	HVSMEg0002G01r2_x_at	HVSMEg0002G01r2	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig25667_x_at	Contig25667	-	-	7e-1	At1g24000	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	HY02C19u_at	HY02C19u	-	-	5e+0	At4g15610	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.95	Contig24225_at	Contig24225	-	-	2e-12	At3g10360	APUM4 (Arabidopsis Pumilio 4)	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.96	9507414_R_4264-4644_at	9507414_R_4264-4644	-	-	1e+1	At5g06320	NHL3	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.96	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.96	HY06F24u_x_at	HY06F24u	-	-	1e+1	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.96	Contig10097_at	Contig10097	-	-	4e-1	At3g16450	jacalin lectin family protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.97	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	96.6	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7	95.5	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7	95.5	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.4	94.8	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.3	94.6	GSM146360	Golden Promise Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.0	93.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage