Co-expression analysis

Gene ID Contig12544_at
Gene name
Homology with ArabidopsisSimilar to At5g03100: F-box family protein (HF=2e+1)
Module size 6 genes
NF 0.68
%ile 89.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig12544_atContig12544--2e+1At5g03100F-box family proteinO.I.H.G.S.X.
0.7388.70.96Contig10269_atContig10269--7e-13At1g80780CCR4-NOT transcription complex protein, putativeO.I.H.G.S.X.
0.7388.70.97Contig16514_atContig16514--1e+0At2g01590CRR3 (CHLORORESPIRATORY REDUCTION 3)O.I.H.G.S.X.
0.6784.70.96Contig6820_atContig6820--7e-12At4g13350NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE)O.I.H.G.S.X.
0.5066.90.97Contig9113_atContig9113--2e-26At5g11980conserved oligomeric Golgi complex component-related / COG complex component-relatedO.I.H.G.S.X.
0.2732.10.96rbags14j23_s_atrbags14j23--6e-1At3g53668CPuORF51 (Conserved peptide upstream open reading frame 51)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.298.7GSM261056Xantha b-12 Cotrol rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.897.8GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.397.4GSM261057Xantha b-12 Cotrol rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.997.1GSM261063Xantha s-46 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.897.0GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.696.8GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.196.2GSM282035Malting_day4_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.895.7GSM261060Xantha b-12 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.795.5GSM281747Genotype: Steptoe - rep3GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
3.695.3GSM261077Albina e-16 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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