Co-expression analysis

Gene ID Contig12506_at
Gene name
Homology with ArabidopsisSimilar to At4g31740: - (HF=2e+0)
Module size 6 genes
NF 0.42
%ile 57.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.93Contig12506_atContig12506--2e+0At4g31740-O.I.H.G.S.X.
0.5066.90.93Contig13428_atContig13428--6e-5At3g17160unknown proteinO.I.H.G.S.X.
0.4356.40.93Contig14949_atContig14949--3e-2At3g19100calcium-dependent protein kinase, putative / CDPK, putativeO.I.H.G.S.X.
0.3647.10.93Contig20667_atContig20667--1e+0At5g08480VQ motif-containing proteinO.I.H.G.S.X.
0.3138.60.93HVSMEb0011J07r2_atHVSMEb0011J07r2--4e-3At5g39670calcium-binding EF hand family proteinO.I.H.G.S.X.
0.2326.10.93Contig4367_s_atContig4367--3e+0At3g04300-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.997.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.695.3GSM160464drought control rep1GSE6990Barley drought stressLink to GEO
3.494.8GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.394.6GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.194.1GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
3.093.8GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.22421.1.S1_at, orthologous to the query gene, Contig12506_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.2TaAffx.22421.1.S1_atAt4g31740--2e-8At5g23450ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)O.I.H.G.S.X.
0.5576.8Ta.10521.1.S1_s_atAt4g31740--3e-13At4g11740SAY1O.I.H.G.S.X.
0.4666.8Ta.8133.3.S1_a_atAt4g31740--4e+0At2g17280phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.
0.2532.1TaAffx.61230.1.S1_atAt4g31740--8e-5At5g48160OBE2 (OBERON2)O.I.H.G.S.X.
0.2329.0Ta.10453.2.S1_a_atAt4g31740--7e-2At5g17510unknown proteinO.I.H.G.S.X.
0.0910.4Ta.7610.1.S1_a_atAt4g31740--1e-6At5g11560catalyticO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage