Co-expression analysis

Gene ID	Contig12506_at
Gene name
Homology with Arabidopsis	Similar to At4g31740: - (HF=2e+0)
Module size	6 genes
NF	0.42
%ile	57.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.93	Contig12506_at	Contig12506	-	-	2e+0	At4g31740	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	Contig13428_at	Contig13428	-	-	6e-5	At3g17160	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.93	Contig14949_at	Contig14949	-	-	3e-2	At3g19100	calcium-dependent protein kinase, putative / CDPK, putative	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.93	Contig20667_at	Contig20667	-	-	1e+0	At5g08480	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.93	HVSMEb0011J07r2_at	HVSMEb0011J07r2	-	-	4e-3	At5g39670	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.93	Contig4367_s_at	Contig4367	-	-	3e+0	At3g04300	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	97.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.6	95.3	GSM160464	drought control rep1	GSE6990	Barley drought stress
3.4	94.8	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3	94.6	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1	94.1	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
3.0	93.8	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.11478.2.S1_at, orthologous to the query gene, Contig12506_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	97.4	PtpAffx.11478.2.S1_at	At4g31740	hypothetical protein	-	5e-28	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.111008.1.S1_at	At4g31740	hypothetical protein	-	2e-9	At2g15560	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.665.2.S1_a_at	At4g31740	hypothetical protein	-	1e+0	At4g08351	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.86064.1.S1_at	At4g31740	hypothetical protein	-	3e-24	At5g65720	NFS1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.145998.1.S1_at	At4g31740	hypothetical protein	-	7e-16	At4g32600	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	Ptp.5256.2.S1_s_at	At4g31740	hypothetical protein	-	5e-46	At1g20920	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	Ptp.4175.1.S1_s_at	At4g31740	hypothetical protein	-	1e+0	At5g54300	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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