Co-expression analysis

Gene ID	Contig1248_s_at
Gene name
Homology with Arabidopsis	Similar to At1g74060: 60S ribosomal protein L6 (RPL6B) (HF=3e-8)
Module size	6 genes
NF	0.72
%ile	92.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	Contig1248_s_at	Contig1248	-	-	3e-8	At1g74060	60S ribosomal protein L6 (RPL6B)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.96	HD04N07u_at	HD04N07u	-	-	4e+0	At5g52940	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.96	Contig17526_at	Contig17526	-	-	4e+0	At4g33020	ZIP9	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	HVSMEa0011L19r2_x_at	HVSMEa0011L19r2	-	-	5e-2	At3g50210	2-oxoacid-dependent oxidase, putative	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	Mla12DH_orf_3pri12_s_at	Mla12DH_orf_3pri12	-	-	6e-1	At4g23620	50S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig12086_at	Contig12086	-	-	1e+0	At1g49640	hydrolase	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
29.1	99.9	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
15.5	99.6	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0	93.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0	93.8	GSM372947	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.8	93.1	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.8	93.1	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.7	92.7	GSM372960	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM160744	drought control rep2	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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