Co-expression analysis

Gene ID	Contig12483_at
Gene name
Homology with Arabidopsis	Similar to At3g57390: AGL18 (HF=2e-3)
Module size	12 genes
NF	0.38
%ile	51.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	63.2	0.72	Contig12483_at	Contig12483	-	-	2e-3	At3g57390	AGL18	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.82	Contig481_s_at	Contig481	-	-	6e-2	At1g80730	ZFP1 (ZINC-FINGER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.88	Contig4818_at	Contig4818	-	-	2e-14	At4g18810	binding / catalytic/ transcription repressor	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.79	HB25K10r_s_at	HB25K10r	-	-	3e+0	At2g33550	gt-2-related	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.81	Contig481_at	Contig481	-	-	6e-2	At1g80730	ZFP1 (ZINC-FINGER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.84	Contig14778_at	Contig14778	-	-	7e-10	At4g17640	CKB2	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.85	Contig21801_at	Contig21801	-	-	1e-1	At5g25490	zinc finger (Ran-binding) family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.83	Contig10444_at	Contig10444	-	-	6e-1	At5g42232	-	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.79	Contig24738_at	Contig24738	-	-	1e+0	At5g67110	ALC (ALCATRAZ)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.84	HW03C10u_at	HW03C10u	-	-	3e+0	At4g32690	GLB3	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.82	Contig19922_at	Contig19922	-	-	2e+1	At5g15460	MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.82	Contig919_s_at	Contig919	-	-	5e+0	At1g30870	cationic peroxidase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.5	99.6	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
9.6	99.0	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.8	98.9	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.6	98.2	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.5	98.2	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.3	98.1	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.9	97.9	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.0	97.2	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
5.0	97.2	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.3	96.4	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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