Co-expression analysis

Gene ID	Contig12442_at
Gene name
Homology with Arabidopsis	Similar to At5g26220: ChaC-like family protein (HF=3e+0)
Module size	6 genes
NF	0.02
%ile	2.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.87	Contig12442_at	Contig12442	-	-	3e+0	At5g26220	ChaC-like family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.87	HY02C22u_x_at	HY02C22u	-	-	4e+0	At5g11870	-	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.90	HA03O05u_s_at	HA03O05u	-	-	1e+1	At2g18670	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.89	rbags17a06_s_at	rbags17a06	-	-	1e+0	At5g42300	UBL5 (UBIQUITIN-LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.89	Contig3932_at	Contig3932	-	-	2e-3	At1g16230	syntaxin-related family protein	O.I.	H.G.	S.X.	Please select
0.01	1.1	0.89	HF17H18r_s_at	HF17H18r	-	-	3e+0	At4g03410	peroxisomal membrane protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.7	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.0	98.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.9	97.9	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.4	96.6	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4	96.6	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1	96.2	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6	95.3	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6	95.3	GSM398251	Martin_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6	95.3	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the grape gene, 1622404_at, orthologous to the query gene, Contig12442_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1622404_at	At5g26220	-	-	1e+0	At3g24700	F-box family protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	1612152_at	At5g26220	-	-	4e+0	At3g08490	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	1619315_s_at	At5g26220	hypothetical protein LOC100246956	-	2e-21	At3g53020	STV1 (SHORT VALVE1)	O.I.	H.G.	S.X.	Please select
0.02	3.2	1613150_at	At5g26220	hypothetical protein LOC100254719	-	1e-68	At3g55280	RPL23AB (RIBOSOMAL PROTEIN L23AB)	O.I.	H.G.	S.X.	Please select
0.01	2.1	1618882_at	At5g26220	hypothetical protein LOC100265595	-	4e-16	At5g57815	cytochrome c oxidase subunit 6b, putative	O.I.	H.G.	S.X.	Please select
0.00	0.5	1614850_at	At5g26220	-	-	1e-10	At5g66290	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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