CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig12442_at

Gene name
Homology with Arabidopsis Similar to At5g26220: ChaC-like family protein (HF=3e+0)

Module size 6 genes

NF 0.02

%ile 2.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.87 Contig12442_at Contig12442 - - 3e+0 At5g26220 ChaC-like family protein O.I. H.G. S.X.
0.44 58.9 0.87 HY02C22u_x_at HY02C22u - - 4e+0 At5g11870 - O.I. H.G. S.X.
0.03 2.6 0.90 HA03O05u_s_at HA03O05u - - 1e+1 At2g18670 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.02 1.8 0.89 rbags17a06_s_at rbags17a06 - - 1e+0 At5g42300 UBL5 (UBIQUITIN-LIKE PROTEIN 5) O.I. H.G. S.X.
0.02 1.8 0.89 Contig3932_at Contig3932 - - 2e-3 At1g16230 syntaxin-related family protein O.I. H.G. S.X.
0.01 1.1 0.89 HF17H18r_s_at HF17H18r - - 3e+0 At4g03410 peroxisomal membrane protein-related O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.2 98.7 GSM398263 HS41-1_0d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.0 98.4 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.9 97.9 GSM398264 HS41-1_1d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.4 96.6 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4 96.6 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1 96.2 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6 95.3 GSM261076 Albina e-16 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6 95.3 GSM398251 Martin_0d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6 95.3 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3 94.6 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.34924.2.S1_at, orthologous to the query gene, Contig12442_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 PtpAffx.34924.2.S1_at At5g26220 hypothetical protein - 3e+0 At4g19003 VPS25 O.I. H.G. S.X.
0.31 53.7 Ptp.5241.1.S1_at At5g26220 hypothetical protein - 5e-41 At4g02660 WD-40 repeat family protein / beige-related O.I. H.G. S.X.
0.25 43.6 PtpAffx.40537.1.A1_at At5g26220 chromatin remodeling complex subunit - 1e-1 At3g18260 reticulon family protein (RTNLB9) O.I. H.G. S.X.
0.25 43.6 PtpAffx.207350.1.S1_s_at At5g26220 hypothetical protein - 2e-35 At4g36630 EMB2754 (EMBRYO DEFECTIVE 2754) O.I. H.G. S.X.
0.23 40.5 PtpAffx.35552.1.A1_at At5g26220 hypothetical protein - 3e+0 At1g61090 unknown protein O.I. H.G. S.X.
0.17 29.1 PtpAffx.85710.1.S1_at At5g26220 hypothetical protein - 1e-6 At3g45470 zinc finger protein-related O.I. H.G. S.X.
0.11 18.1 PtpAffx.25630.1.A1_at At5g26220 magnesium transporter - 1e-6 At3g58970 magnesium transporter CorA-like family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage