Co-expression analysis

Gene ID	Contig12442_at
Gene name
Homology with Arabidopsis	Similar to At5g26220: ChaC-like family protein (HF=3e+0)
Module size	6 genes
NF	0.02
%ile	2.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.87	Contig12442_at	Contig12442	-	-	3e+0	At5g26220	ChaC-like family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.87	HY02C22u_x_at	HY02C22u	-	-	4e+0	At5g11870	-	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.90	HA03O05u_s_at	HA03O05u	-	-	1e+1	At2g18670	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.89	rbags17a06_s_at	rbags17a06	-	-	1e+0	At5g42300	UBL5 (UBIQUITIN-LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.89	Contig3932_at	Contig3932	-	-	2e-3	At1g16230	syntaxin-related family protein	O.I.	H.G.	S.X.	Please select
0.01	1.1	0.89	HF17H18r_s_at	HF17H18r	-	-	3e+0	At4g03410	peroxisomal membrane protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.7	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.0	98.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.9	97.9	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.4	96.6	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4	96.6	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1	96.2	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6	95.3	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6	95.3	GSM398251	Martin_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6	95.3	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.84948.1.S1_at, orthologous to the query gene, Contig12442_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	92.5	GmaAffx.84948.1.S1_at	At5g26220	-	-	2e-5	At1g77990	AST56	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.41924.1.S1_at	At5g26220	-	-	2e+0	At5g24410	glucosamine/galactosamine-6-phosphate isomerase-related	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.83942.1.S1_at	At5g26220	-	-	2e-12	At1g29050	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	17.5	Gma.8776.2.S1_at	At5g26220	-	-	3e-22	At1g16720	HCF173 (high chlorophyll fluorescence phenotype 173)	O.I.	H.G.	S.X.	Please select
0.04	7.0	GmaAffx.80390.1.S1_at	At5g26220	-	-	3e+0	At5g18100	CSD3 (copper/zinc superoxide dismutase 3)	O.I.	H.G.	S.X.	Please select
0.04	7.0	GmaAffx.80802.1.S1_at	At5g26220	-	-	2e-8	At1g18180	oxidoreductase, acting on the CH-CH group of donors	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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