Co-expression analysis

Gene ID Contig12434_at
Gene name
Homology with ArabidopsisSimilar to At4g30930: NFD1 (NUCLEAR FUSION DEFECTIVE 1) (HF=2e-6)
Module size 6 genes
NF 0.65
%ile 86.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.96Contig12434_atContig12434--2e-6At4g30930NFD1 (NUCLEAR FUSION DEFECTIVE 1)O.I.H.G.S.X.
0.7187.10.96Contig13988_atContig13988--5e-4At4g24020NLP7 (NIN LIKE PROTEIN 7)O.I.H.G.S.X.
0.6784.70.96Contig1056_s_atContig1056--5e-140At4g05050UBQ11 (UBIQUITIN 11)O.I.H.G.S.X.
0.6077.30.97Contig13783_atContig13783--4e-1At2g41225unknown proteinO.I.H.G.S.X.
0.5066.90.96Contig6826_s_atContig6826--8e-1At2g15535LCR10 (Low-molecular-weight cysteine-rich 10)O.I.H.G.S.X.
0.4356.40.96Contig9200_atContig9200--6e-1At5g10230ANNAT7 (ANNEXIN ARABIDOPSIS 7)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8092.50.94Contig8840_atContig8840--4e-1At3g55680invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.6784.70.92Contig19002_atContig19002--1e+0At2g41130basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.6784.70.96Contig14599_atContig14599--3e-2At3g17160unknown proteinO.I.H.G.S.X.
0.6178.70.96Contig9902_atContig9902--2e+0At5g35170adenylate kinase family proteinO.I.H.G.S.X.
0.5572.00.94rbah13h16_s_atrbah13h16--1e+0At1g26800zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5066.90.95Contig13297_atContig13297--3e-16At3g66658ALDH22a1 (Aldehyde Dehydrogenase 22a1)O.I.H.G.S.X.
0.5066.90.96Contig10872_atContig10872--2e+0At4g11911-O.I.H.G.S.X.
0.5066.90.96Contig9248_s_atContig9248--1e+0At3g15110unknown proteinO.I.H.G.S.X.
0.4661.00.95Contig9642_atContig9642--1e-13At4g27960UBC9 (UBIQUITIN CONJUGATING ENZYME 9)O.I.H.G.S.X.
0.4458.90.93Contig222_s_atContig222--1e+0At4g30064LCR61 (Low-molecular-weight cysteine-rich 61)O.I.H.G.S.X.
0.4458.90.96Contig1063_s_atContig1063--1e-74At1g31340RUB1 (RELATED TO UBIQUITIN 1)O.I.H.G.S.X.
0.4053.10.94Contig10638_s_atContig10638--5e-1At2g20921unknown proteinO.I.H.G.S.X.
0.3647.10.94Contig1362_s_atContig1362--8e-25At3g61110ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)O.I.H.G.S.X.
0.3647.10.94Contig11123_atContig11123--5e+0At3g29330unknown proteinO.I.H.G.S.X.
0.3647.10.95Contig26273_atContig26273--2e-15At5g67320HOS15 (high expression of osmotically responsive genes 15)O.I.H.G.S.X.
0.3647.10.95Contig15882_s_atContig15882--3e-1At5g07220ATBAG3 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 3)O.I.H.G.S.X.
0.3647.10.95Contig11659_atContig11659--5e-2At5g32440-O.I.H.G.S.X.
0.3545.10.96Contig6616_atContig6616--1e-57At4g35260IDH1 (ISOCITRATE DEHYDROGENASE 1)O.I.H.G.S.X.
0.3545.10.95Contig5368_atContig5368--2e+0At3g46150unknown proteinO.I.H.G.S.X.
0.3443.60.93Contig5243_atContig5243--2e-2At1g75550glycine-rich proteinO.I.H.G.S.X.
0.3342.60.94Contig8533_atContig8533--6e-1At5g66940Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.3342.60.94Contig8488_atContig8488--9e-6At1g28490SYP61 (SYNTAXIN OF PLANTS 61)O.I.H.G.S.X.
0.3342.60.95Contig17541_atContig17541--5e-1At1g60995unknown proteinO.I.H.G.S.X.
0.3342.60.95Contig9026_atContig9026--1e-3At5g21160La domain-containing protein / proline-rich family proteinO.I.H.G.S.X.
0.3240.30.94Contig7837_atContig7837--7e-4At5g04200AtMC9 (metacaspase 9)O.I.H.G.S.X.
0.3138.60.94Contig9869_atContig9869--7e-13At4g39100SHL1 (short life)O.I.H.G.S.X.
0.3138.60.96Contig16048_atContig16048--8e-1At1g24880UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylaseO.I.H.G.S.X.
0.2935.50.94HV_CEb0022N15r2_atHV_CEb0022N15r2--4e+0At4g00895ATP synthase delta chain-relatedO.I.H.G.S.X.
0.2935.50.95Contig18184_atContig18184--1e+1At4g1045060S ribosomal protein L9 (RPL90D)O.I.H.G.S.X.
0.2935.50.96Contig10090_s_atContig10090--3e-1At1g03260-O.I.H.G.S.X.
0.2835.50.94Contig15150_atContig15150--2e+0At4g13850GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)O.I.H.G.S.X.
0.2732.10.96Contig6981_atContig6981--4e-5At4g00170vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.2732.10.92HVSMEm0001O16r2_s_atHVSMEm0001O16r2--3e-1At4g16165Expressed proteinO.I.H.G.S.X.
0.2732.10.96Contig10389_atContig10389--2e+0At5g67490unknown proteinO.I.H.G.S.X.
0.2630.40.95Contig5369_atContig5369--1e-1At3g46150unknown proteinO.I.H.G.S.X.
0.2528.90.94Contig5454_atContig5454--2e+0At1g42960-O.I.H.G.S.X.
0.2528.90.94Contig3960_atContig3960--2e-3At1g3568050S ribosomal protein L21, chloroplast / CL21 (RPL21)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.898.9GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
8.698.8GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
8.398.8GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.798.3GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.298.0GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.897.8GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
5.797.7GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
5.497.5GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.197.3GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
4.897.0GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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