Co-expression analysis

Gene ID	Contig12434_at
Gene name
Homology with Arabidopsis	Similar to At4g30930: NFD1 (NUCLEAR FUSION DEFECTIVE 1) (HF=2e-6)
Module size	6 genes
NF	0.65
%ile	86.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.96	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.96	Contig13988_at	Contig13988	-	-	5e-4	At4g24020	NLP7 (NIN LIKE PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig1056_s_at	Contig1056	-	-	5e-140	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig13783_at	Contig13783	-	-	4e-1	At2g41225	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig6826_s_at	Contig6826	-	-	8e-1	At2g15535	LCR10 (Low-molecular-weight cysteine-rich 10)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig9200_at	Contig9200	-	-	6e-1	At5g10230	ANNAT7 (ANNEXIN ARABIDOPSIS 7)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.8	98.9	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
8.6	98.8	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
8.3	98.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.7	98.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.2	98.0	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.8	97.8	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
5.7	97.7	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
5.4	97.5	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.1	97.3	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
4.8	97.0	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

A co-expression module including the maize gene, Zm.9497.1.A1_at, orthologous to the query gene, Contig12434_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	76.1	Zm.9497.1.A1_at	At4g30930	hypothetical protein LOC100194267	-	4e-11	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.57	75.1	Zm.800.2.A1_at	At4g30930	Phosphoenolpyruvate carboxylase	-	8e-5	At3g14940	ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.4030.4.A1_at	At4g30930	hypothetical protein LOC100194153	-	1e-19	At3g60245	60S ribosomal protein L37a (RPL37aC)	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.19158.2.S1_a_at	At4g30930	hypothetical protein LOC100273021 /// thioredoxin F-type	-	3e-11	At5g16400	ATF2	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.2586.1.A1_at	At4g30930	GTP binding protein	-	1e-75	At4g17170	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.10095.1.A1_at	At4g30930	chloroplast small heat shock protein	-	2e+0	At3g57062	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.9555.1.A1_at	At4g30930	-	-	1e-2	At3g47350	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.306.1.S1_s_at	At4g30930	HMGI/Y protein /// high mobility group I/Y-2	-	2e+0	At3g47620	AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14)	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.13720.1.S1_at	At4g30930	-	-	1e-18	At3g18040	MPK9 (MAP KINASE 9)	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.18208.1.A1_at	At4g30930	-	-	4e+0	At3g45245	-	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.17295.1.A1_at	At4g30930	-	-	2e+0	At2g18050	HIS1-3 (HISTONE H1-3)	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.3558.1.A1_at	At4g30930	-	-	3e+0	At1g68620	hydrolase	O.I.	H.G.	S.X.	Please select
0.15	8.6	Zm.4164.4.A1_x_at	At4g30930	-	-	3e+1	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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