Co-expression analysis

Gene ID Contig12434_at
Gene name
Homology with ArabidopsisSimilar to At4g30930: NFD1 (NUCLEAR FUSION DEFECTIVE 1) (HF=2e-6)
Module size 6 genes
NF 0.65
%ile 86.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.96Contig12434_atContig12434--2e-6At4g30930NFD1 (NUCLEAR FUSION DEFECTIVE 1)O.I.H.G.S.X.
0.7187.10.96Contig13988_atContig13988--5e-4At4g24020NLP7 (NIN LIKE PROTEIN 7)O.I.H.G.S.X.
0.6784.70.96Contig1056_s_atContig1056--5e-140At4g05050UBQ11 (UBIQUITIN 11)O.I.H.G.S.X.
0.6077.30.97Contig13783_atContig13783--4e-1At2g41225unknown proteinO.I.H.G.S.X.
0.5066.90.96Contig6826_s_atContig6826--8e-1At2g15535LCR10 (Low-molecular-weight cysteine-rich 10)O.I.H.G.S.X.
0.4356.40.96Contig9200_atContig9200--6e-1At5g10230ANNAT7 (ANNEXIN ARABIDOPSIS 7)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.898.9GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
8.698.8GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
8.398.8GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.798.3GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.298.0GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.897.8GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
5.797.7GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
5.497.5GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.197.3GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
4.897.0GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os05g0557800, orthologous to the query gene, Contig12434_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6787.2Os05g0557800At4g30930-Ribosomal protein L21 family protein7e-10At4g30930NFD1 (NUCLEAR FUSION DEFECTIVE 1)O.I.H.G.S.X.
0.6483.4Os03g0240800At4g30930-Small nuclear ribonucleoprotein Sm D3 (snRNP coreprotein D3) (Sm-D3)3e-8At1g20580small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.S.X.
0.5371.3Os03g0355800At4g30930-Diphthine synthase (EC (Diphthamidebiosynthesis methyltransferase)3e-3At4g31790diphthine synthase, putative (DPH5)O.I.H.G.S.X.
0.5371.3Os02g0312700At4g30930-Conserved hypothetical protein9e-3At2g34050-O.I.H.G.S.X.
0.5269.6Os11g0139100At4g30930-50S ribosomal protein L247e-6At5g23535KOW domain-containing proteinO.I.H.G.S.X.
0.4660.9Os11g0585700At4g30930-50S ribosomal protein L42e-10At2g20060ribosomal protein L4 family proteinO.I.H.G.S.X.
0.3644.0Os03g0802700At4g30930-RH27 helicase (Fragment)2e-2At5g65900DEAD/DEAH box helicase, putativeO.I.H.G.S.X.
0.3541.7Os02g0167700At4g30930-TBP-interacting 120 family protein6e-38At2g02560CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

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