Co-expression analysis

Gene ID Contig12406_at
Gene name
Homology with ArabidopsisSimilar to At1g76850: SEC5A (EXOCYST COMPLEX COMPONENT SEC5) (HF=2e-7)
Module size 6 genes
NF 0.53
%ile 74.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7388.70.95Contig12406_atContig12406--2e-7At1g76850SEC5A (EXOCYST COMPLEX COMPONENT SEC5)O.I.H.G.S.X.
0.5975.80.95Contig14455_atContig14455--4e-16At1g75760ER lumen protein retaining receptor family proteinO.I.H.G.S.X.
0.5774.90.95Contig19631_atContig19631--4e-1At2g04880ZAP1 (ZINC-DEPENDENT ACTIVATOR PROTEIN-1)O.I.H.G.S.X.
0.5066.90.95Contig5560_atContig5560--4e-1At3g51550FER (FERONIA)O.I.H.G.S.X.
0.3849.50.95Contig13187_atContig13187--1e-2At1g67320DNA primase, large subunit familyO.I.H.G.S.X.
0.3240.30.95Contig10917_atContig10917--5e-2At4g17090CT-BMY (CHLOROPLAST BETA-AMYLASE)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.398.1GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.296.3GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.795.5GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM419976Palea_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
3.695.3GSM440964Control palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.093.8GSM372956genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.692.3GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.591.9GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.390.9GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.290.3GSM261029ABA-Late-rep3GSE10328ABA experimentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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